View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10391_low_3 (Length: 470)
Name: NF10391_low_3
Description: NF10391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10391_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 6699829 - 6700266
Alignment:
| Q |
1 |
aggatttagttactcaaatgtcctattcaacaccaatttattagtgaatttatgtagcatactttatttcgatgtatatttggtatagtgtccttgacaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6699829 |
aggatttagttactcaaatgtcctattcagcaccaatttattagtgaatttatgtagcatactttgtttcgatgtatatttggtatagtgtccttgacaa |
6699928 |
T |
|
| Q |
101 |
atgataaacaaaattcaactctaaatctttctactg-ttttagattagaatgaatgaaggattacaattatgcacctaatttgcattgataaatatcagt |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
6699929 |
atgataaacaaaattcaactctaaatctttctactggttttagattagaatgaatgaaggcttgcaattatgcacctaatttgcattgataaatatcagt |
6700028 |
T |
|
| Q |
200 |
tatccaaatattatgacagaaaataaactgtaagcaatatgtacatgtggtataacttacctctcttttgaaggaattaaattcaacttgctccattcaa |
299 |
Q |
| |
|
|||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6700029 |
catcccaatattataacagaatataaagtgtaagcaatatgtacatgtggtataacttacctctcttttgaaggaattaacttcaacttgctccattcaa |
6700128 |
T |
|
| Q |
300 |
agagatataatgtgtacaaaaatcttatttatgaatggaagtggattgggattatataaaagctatatatgaaacttgcacttgagatcgtgctcactga |
399 |
Q |
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|||||||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
6700129 |
agagatataatgtg-acaaacatcttatttatgaatgaaagtggatttggattatataaaagctatatatgaaacttgcact---------------tga |
6700212 |
T |
|
| Q |
400 |
tatgactttaaagtgttgtattctatgtaattcttatttagagttggtgttaat |
453 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
6700213 |
tatgactttatagtggtgtattctatgtaattcttatttagagttgatgttaat |
6700266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 20914118 - 20913771
Alignment:
| Q |
1 |
aggatttagttactcaaatgtcctattcaacaccaatttattagtgaatttatgtagcatactttatttcgatgtatatttggtatagtgtccttgacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20914118 |
aggatttagttactcaaatgtcctattcagcaccaatttattagtgaatttatgtagcatacttcgtttcgatgtatatttggtatagtgtccttgacaa |
20914019 |
T |
|
| Q |
101 |
atgataaacaaaattcaactctaaatctttctactg-ttttagattagaatgaatgaaggattacaattatgcacctaatttgcattgataaatatcagt |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20914018 |
atgataaacaaaattcaactctaaatctttctactggttttatattagaatgaacgaaggattacaattatgcacctaatttgcattgataaatatcagt |
20913919 |
T |
|
| Q |
200 |
tatccaaatattatgacagaaaataaactgtaagcaatatgtacatgtggtataacttacctctcttttgaaggaattaaattcaacttgctccattcaa |
299 |
Q |
| |
|
|||| ||||| ||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
20913918 |
catcccaatatgatgacagaagataaagtgtaagcaatatgtacatgtcgtaaaacttacctctcttttgaaggaattaacttcaacttgctccattcaa |
20913819 |
T |
|
| Q |
300 |
agagatataatgtgtacaaaaatcttatttatgaatggaagtggattg |
347 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
20913818 |
agagatataatgtgtacaaaaaccttatttatgaatggaagtggattg |
20913771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 381 - 453
Target Start/End: Complemental strand, 20913773 - 20913701
Alignment:
| Q |
381 |
ttgagatcgtgctcactgatatgactttaaagtgttgtattctatgtaattcttatttagagttggtgttaat |
453 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||| |
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| T |
20913773 |
ttgagatagtgctcactgatatgactttaaagtggtgtactctatataattcttatttagagttgatgttaat |
20913701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 21137756 - 21137695
Alignment:
| Q |
14 |
tcaaatgtcctattcaacaccaatttattagtgaatttatgtagcatactttatttcgatgt |
75 |
Q |
| |
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||||||||| |||||| ||||||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
21137756 |
tcaaatgtcttattcagttccaatttattaatgaatttatgtagcatactttgtttcgatgt |
21137695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 143 - 414
Target Start/End: Original strand, 25533843 - 25534105
Alignment:
| Q |
143 |
attagaatgaatgaaggattacaattatgcacctaatttgcattgataaatatcagttatccaaatattatgacagaaaataaactgtaagcaatatgta |
242 |
Q |
| |
|
|||||||||||||||||||| |||||||| | |||||||||||| ||||||||||| |||| ||||||||||||||| ||| | ||||||| | || | |
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| T |
25533843 |
attagaatgaatgaaggattgcaattatgggcttaatttgcattggtaaatatcagtcatcccaatattatgacagaagatagagggtaagcattctgaa |
25533942 |
T |
|
| Q |
243 |
catgtggtataacttacctctcttttgaaggaattaaattcaacttgctccattcaaaga-gatataatgtgtacaaaaatcttatttatgaatggaagt |
341 |
Q |
| |
|
|| ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
25533943 |
cacgtggtataatttacctctctttggaaggaattaacttcaacttgctccattcaaagaggatataatgtg----------ttatttatgaatggaagt |
25534032 |
T |
|
| Q |
342 |
ggattgggattatataaaagctatatatgaaacttgcacttgagatcgtgctcactgatatgactttaaagtg |
414 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
25534033 |
ggattgggattatataaaagttgtatatgaaacttgcacttgagatagtgcccactgatatgactttaaagtg |
25534105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 25532990 - 25533091
Alignment:
| Q |
32 |
accaatttattagtgaatttatgtagcatactttatttcgatgtatatttggtatagtgtccttgacaaatgataaacaaaattcaactctaaatctttc |
131 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
25532990 |
accattttattagtgaatttatgtagcatactttgtttcgatgtatctttggtatagtgtccttgacaaatgataaacaaaattaaacttcaaatctttc |
25533089 |
T |
|
| Q |
132 |
ta |
133 |
Q |
| |
|
|| |
|
|
| T |
25533090 |
ta |
25533091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 2303734 - 2303878
Alignment:
| Q |
33 |
ccaatttattagtgaatttatgtagcatactttatttcgatgtatatttggtatagtgtccttgacaaatgataaacaaaattcaactctaaatctttct |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| |||||||||||| ||||| ||||||||||||| | |
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|
| T |
2303734 |
ccaatttattagtgaatttatgtagcatactttgtttcgatgtatatttggtataatgtacttgaaaaatgataaacagaattcgactctaaatcttt-t |
2303832 |
T |
|
| Q |
133 |
act-gttttagattagaatgaatgaaggattacaattatgcaccta |
177 |
Q |
| |
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|| ||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2303833 |
gctggttttagattagaatgaatgaaggattgcaattatgcaccta |
2303878 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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