View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10391_low_4 (Length: 458)

Name: NF10391_low_4
Description: NF10391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10391_low_4
NF10391_low_4
[»] scaffold0200 (1 HSPs)
scaffold0200 (17-442)||(1199-1625)
[»] chr5 (5 HSPs)
chr5 (17-442)||(41973891-41974317)
chr5 (351-392)||(23754491-23754532)
chr5 (351-392)||(23774525-23774566)
chr5 (351-392)||(23819946-23819987)
chr5 (351-392)||(23861478-23861519)
[»] chr4 (2 HSPs)
chr4 (347-389)||(20020248-20020290)
chr4 (21-57)||(20020573-20020609)
[»] chr8 (2 HSPs)
chr8 (345-390)||(31144856-31144901)
chr8 (346-393)||(19727413-19727460)
[»] chr3 (17 HSPs)
chr3 (345-405)||(2697189-2697249)
chr3 (347-390)||(1898131-1898174)
chr3 (347-390)||(1907577-1907620)
chr3 (351-390)||(1941033-1941072)
chr3 (28-130)||(988653-988755)
chr3 (23-72)||(1003726-1003775)
chr3 (23-72)||(1021723-1021772)
chr3 (25-85)||(803979-804039)
chr3 (353-393)||(1004034-1004074)
chr3 (353-393)||(1022031-1022071)
chr3 (351-390)||(1891524-1891563)
chr3 (351-390)||(2931470-2931509)
chr3 (351-393)||(1937434-1937476)
chr3 (351-392)||(968233-968274)
chr3 (287-388)||(2458873-2458974)
chr3 (350-391)||(12132618-12132659)
chr3 (355-391)||(4142608-4142644)
[»] chr7 (1 HSPs)
chr7 (350-391)||(1078664-1078705)


Alignment Details
Target: scaffold0200 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Complemental strand, 1625 - 1199
Alignment:
Q  17 actttgtaggttacctgtgaagctcttccttcaacttcgatacgtttgcaagtcatagaaatccctaatttctaatcccaatttcgccaaaaaacacatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1625 actttgtaggttacctgtgaagctcttccttcaacttcgatacattagcaagtcatagaaatccctaatttctaatcccaatttcgccaaaaaacacatt 1526  T
Q  117 cgtctgtcaaccacgcgtcacattcacaccttaagcttctccaatctctcacacaaattcgttctcacatcttatcgactccactcagttttcaccaatg 216  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1525 cgtctgtcgaccacgcgtcacattcacaccttaagcttctccaatctctcacacaaattcgttctcacatcttatcgactccactcggttttcaccaatg 1426  T
Q  217 taaccgctaatgccacacgacttgagtatcctcc-aataactatgataaacaaaaccctcgaaacaattacattatatagttggctcttgcgacgacatc 315  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1425 taaccgctaatgccacacgacttgagtatcctccaaataactatgatgaacaaaaccctcgaaacaattacattatatagttggctcttgtgacgacatc 1326  T
Q  316 ctttgtcttgctggctaatataaaaattacattctattgtggaacccttccactagaaaattcaaggaattgcccccttatcaaaggccacaaattgtta 415  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1325 ctttgtcttgctggctaatataaaaattgcattctattgtggaacccttccactagaaaattcaaggaattgcccccttatcaaaggccacaaactgtta 1226  T
Q  416 ctatggcttatatgatgtatggttttg 442  Q
    ||||||||||||||| |||||||||||    
T  1225 ctatggcttatatgacgtatggttttg 1199  T

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Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Complemental strand, 41974317 - 41973891
Alignment:
Q  17 actttgtaggttacctgtgaagctcttccttcaacttcgatacgtttgcaagtcatagaaatccctaatttctaatcccaatttcgccaaaaaacacatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41974317 actttgtaggttacctgtgaagctcttccttcaacttcgatacattagcaagtcatagaaatccctaatttctaatcccaatttcgccaaaaaacacatt 41974218  T
Q  117 cgtctgtcaaccacgcgtcacattcacaccttaagcttctccaatctctcacacaaattcgttctcacatcttatcgactccactcagttttcaccaatg 216  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41974217 cgtctgtcgaccacgcgtcacattcacaccttaagcttctccaatctctcacacaaattcgttctcacatcttatcgactccactcggttttcaccaatg 41974118  T
Q  217 taaccgctaatgccacacgacttgagtatcctcc-aataactatgataaacaaaaccctcgaaacaattacattatatagttggctcttgcgacgacatc 315  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41974117 taaccgctaatgccacacgacttgagtatcctccaaataactatgatgaacaaaaccctcgaaacaattacattatatagttggctcttgtgacgacatc 41974018  T
Q  316 ctttgtcttgctggctaatataaaaattacattctattgtggaacccttccactagaaaattcaaggaattgcccccttatcaaaggccacaaattgtta 415  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41974017 ctttgtcttgctggctaatataaaaattgcattctattgtggaacccttccactagaaaattcaaggaattgcccccttatcaaaggccacaaactgtta 41973918  T
Q  416 ctatggcttatatgatgtatggttttg 442  Q
    ||||||||||||||| |||||||||||    
T  41973917 ctatggcttatatgacgtatggttttg 41973891  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 23754532 - 23754491
Alignment:
Q  351 attgtggaacccttccactagaaaattcaaggaattgccccc 392  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  23754532 attgtggaacccttccattagaaaattcaaggaattgccccc 23754491  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 23774566 - 23774525
Alignment:
Q  351 attgtggaacccttccactagaaaattcaaggaattgccccc 392  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  23774566 attgtggaacccttccattagaaaattcaaggaattgccccc 23774525  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 23819987 - 23819946
Alignment:
Q  351 attgtggaacccttccactagaaaattcaaggaattgccccc 392  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  23819987 attgtggaacccttccattagaaaattcaaggaattgccccc 23819946  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 23861519 - 23861478
Alignment:
Q  351 attgtggaacccttccactagaaaattcaaggaattgccccc 392  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  23861519 attgtggaacccttccattagaaaattcaaggaattgccccc 23861478  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 389
Target Start/End: Complemental strand, 20020290 - 20020248
Alignment:
Q  347 ttctattgtggaacccttccactagaaaattcaaggaattgcc 389  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  20020290 ttctattgtggaacccttccattagaaaattcaaggaattgcc 20020248  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 20020609 - 20020573
Alignment:
Q  21 tgtaggttacctgtgaagctcttccttcaacttcgat 57  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  20020609 tgtaggttaccagtgaagctcctccttcaacttcgat 20020573  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 31144901 - 31144856
Alignment:
Q  345 cattctattgtggaacccttccactagaaaattcaaggaattgccc 390  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  31144901 cattcgattgtggaacccttccattagaaaattcaaggaattgccc 31144856  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 393
Target Start/End: Original strand, 19727413 - 19727460
Alignment:
Q  346 attctattgtggaacccttccactagaaaattcaaggaattgccccct 393  Q
    |||| ||||||||||||||||  ||||||||||||||| |||||||||    
T  19727413 attcgattgtggaacccttccgttagaaaattcaaggacttgccccct 19727460  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 2697249 - 2697189
Alignment:
Q  345 cattctattgtggaacccttccactagaaaattcaaggaattgcccccttatcaaaggcca 405  Q
    ||||||||||||||||||||| | ||||||||| |||||||||||| ||| ||||| ||||    
T  2697249 cattctattgtggaacccttcaattagaaaatttaaggaattgccctcttttcaaaagcca 2697189  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 1898174 - 1898131
Alignment:
Q  347 ttctattgtggaacccttccactagaaaattcaaggaattgccc 390  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  1898174 ttctattgtggaacccttccattcgaaaattcaaggaattgccc 1898131  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 1907620 - 1907577
Alignment:
Q  347 ttctattgtggaacccttccactagaaaattcaaggaattgccc 390  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  1907620 ttctattgtggaacccttccattcgaaaattcaaggaattgccc 1907577  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 390
Target Start/End: Complemental strand, 1941072 - 1941033
Alignment:
Q  351 attgtggaacccttccactagaaaattcaaggaattgccc 390  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  1941072 attgtggaacccttccattagaaaattcaaggaattgccc 1941033  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 988653 - 988755
Alignment:
Q  28 tacctgtgaagctcttccttcaacttcgatacgtttgcaagtcatagaaatccctaatttctaatcccaatttcgccaaaaaacacattcgtctgtcaac 127  Q
    |||||||||||||| |||||||||| |||| |  ||||||||||| ||| ||  |||| ||| ||||||| ||||| ||||| ||| || | ||||||||    
T  988653 tacctgtgaagctcctccttcaactccgatgctcttgcaagtcatggaattctttaatctctgatcccaaattcgcaaaaaagcaccttagcctgtcaac 988752  T
Q  128 cac 130  Q
    |||    
T  988753 cac 988755  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 1003726 - 1003775
Alignment:
Q  23 taggttacctgtgaagctcttccttcaacttcgatacgtttgcaagtcat 72  Q
    ||||||||| ||||||||| ||||||||||||||| || |||||||||||    
T  1003726 taggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcat 1003775  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 1021723 - 1021772
Alignment:
Q  23 taggttacctgtgaagctcttccttcaacttcgatacgtttgcaagtcat 72  Q
    ||||||||| ||||||||| ||||||||||||||| || |||||||||||    
T  1021723 taggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcat 1021772  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 804039 - 803979
Alignment:
Q  25 ggttacctgtgaagctcttccttcaacttcgatacgtttgcaagtcatagaaatccctaat 85  Q
    |||||||||||||| |||| |||||||| |||| |||||||||||||| ||| || |||||    
T  804039 ggttacctgtgaagttcttacttcaactccgatgcgtttgcaagtcatggaattctctaat 803979  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 393
Target Start/End: Original strand, 1004034 - 1004074
Alignment:
Q  353 tgtggaacccttccactagaaaattcaaggaattgccccct 393  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  1004034 tgtggaacccttccattagaaaattaaaggaattgccccct 1004074  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 393
Target Start/End: Original strand, 1022031 - 1022071
Alignment:
Q  353 tgtggaacccttccactagaaaattcaaggaattgccccct 393  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  1022031 tgtggaacccttccattagaaaattaaaggaattgccccct 1022071  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 390
Target Start/End: Complemental strand, 1891563 - 1891524
Alignment:
Q  351 attgtggaacccttccactagaaaattcaaggaattgccc 390  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  1891563 attgtggaacccttccattagaaaatttaaggaattgccc 1891524  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 390
Target Start/End: Original strand, 2931470 - 2931509
Alignment:
Q  351 attgtggaacccttccactagaaaattcaaggaattgccc 390  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  2931470 attgtggaacccttccattcgaaaattcaaggaattgccc 2931509  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 1937476 - 1937434
Alignment:
Q  351 attgtggaacccttccactagaaaattcaaggaattgccccct 393  Q
    ||||||||| ||||||| |||||||||||||||||||| ||||    
T  1937476 attgtggaatccttccattagaaaattcaaggaattgctccct 1937434  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 392
Target Start/End: Original strand, 968233 - 968274
Alignment:
Q  351 attgtggaacccttccactagaaaattcaaggaattgccccc 392  Q
    ||||||||| ||||||| |||||||||||| |||||||||||    
T  968233 attgtggaatccttccattagaaaattcaaagaattgccccc 968274  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 388
Target Start/End: Original strand, 2458873 - 2458974
Alignment:
Q  287 attatatagttggctcttgcgacgacatcctttgtcttgctggctaatataaaaattacattctattgtggaacccttccactagaaaattcaaggaatt 386  Q
    ||||||| |||||||||||| |||  ||| | ||| ||||||||||  |||||  ||   || |||||||||| || |||| ||||||||||||||||||    
T  2458873 attatatcgttggctcttgcaacggtatcatctgtattgctggctataataaaccttcagttatattgtggaatccatccattagaaaattcaaggaatt 2458972  T
Q  387 gc 388  Q
    ||    
T  2458973 gc 2458974  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 12132618 - 12132659
Alignment:
Q  350 tattgtggaacccttccactagaaaattcaaggaattgcccc 391  Q
    |||||| ||||||||||| ||||||||||||||| |||||||    
T  12132618 tattgttgaacccttccattagaaaattcaaggagttgcccc 12132659  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 4142644 - 4142608
Alignment:
Q  355 tggaacccttccactagaaaattcaaggaattgcccc 391  Q
    |||||||||||||| |||||||||||||| |||||||    
T  4142644 tggaacccttccacaagaaaattcaaggagttgcccc 4142608  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 1078705 - 1078664
Alignment:
Q  350 tattgtggaacccttccactagaaaattcaaggaattgcccc 391  Q
    |||||| ||||||||||| ||||||||||||||| |||||||    
T  1078705 tattgttgaacccttccattagaaaattcaaggagttgcccc 1078664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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