View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10391_low_5 (Length: 439)
Name: NF10391_low_5
Description: NF10391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10391_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 64 - 329
Target Start/End: Complemental strand, 16462686 - 16462421
Alignment:
| Q |
64 |
tattaatttttaactgacctacttaagctttgcaaaacctatttcgtctcattcgattccttaatttatgataaagaannnnnnnnggtagaaaaaacat |
163 |
Q |
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| T |
16462686 |
tattaatttttaactgacctacttaagctttgcaaaacctatttcgtctcattcgattccttaatttatgaaaaagaattttttttggtagaaaaaacat |
16462587 |
T |
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| Q |
164 |
caaatactcactcacacatgaaacagagtcatgaatctgacatgtcataagactattggttccaaccacgaaaccacgcaataacaacaattctcccacg |
263 |
Q |
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| T |
16462586 |
caaatactcactcacacatgaaacatagtcatgaatctgacatgtcataagactattggttccaaccacgaaaccacgcaataacaacaattctcccacg |
16462487 |
T |
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| Q |
264 |
aaaacgaaaacaataaaacatcctcaatccaatgagttaaattttcctttcaccttcttcaactac |
329 |
Q |
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| T |
16462486 |
aaaacgaaaacaataaaacatcctcaatccaatgagttaaattttcctttcaccttcttcaactac |
16462421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 16462767 - 16462706
Alignment:
| Q |
17 |
gacaacgccggataaataagctagtaatatttaaagttatcagtctctattaatttttaact |
78 |
Q |
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| T |
16462767 |
gacaacgcggggtaaataagccagtaatatttaaagttattagtctctattaatttttaact |
16462706 |
T |
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