View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10391_low_6 (Length: 424)
Name: NF10391_low_6
Description: NF10391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10391_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 12693071 - 12692673
Alignment:
| Q |
18 |
aagaatcactgcactcaaaccctaatcttcttcttaaacctatgccgtcaatggaatactacaaggtattgaatgtggatcaagatgcaaccgaacaaga |
117 |
Q |
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| T |
12693071 |
aagaatcactgcactcaaaccctattcttcttcttaaacctatgccgtcaatggaatactacaaggtattaaatgtggatcaagatgcaaccgaacaaga |
12692972 |
T |
|
| Q |
118 |
gttgataattgccttnnnnnnntttgcttttgcttatcacccggatagaaaccgtggaaatgaagaagaagccgaaagaaaattcaagtttggttacaat |
217 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12692971 |
gttgataattgccttaaaaaaatttgcttttgcttatcacccagatagaaaccgtggaaatgaagaagaagccgaaagaaaattcaagtttggttacaat |
12692872 |
T |
|
| Q |
218 |
gcttatgaagttttaatagatcccgagaagcgtaggatctatgacgaatatggcgaggaagggcttcaatttggttggacccctccacggcgtcagaacc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12692871 |
gcttatgaagttttaatagatcccgagaagcgtaggatctatgacgaatatggcgaggaagggcttcaatttggttggacccctccacggcgtcagaacc |
12692772 |
T |
|
| Q |
318 |
attcatcatctaactcatctccatcgtctgctccttcttctcgtcagtcaaaaagcaccaattcatcatcttcgtcttcatcgtcctcctcttcttctc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12692771 |
attcatcatctaactcatctccatcgtctgctccttcttctcgtcagtcaaaaagcaccaattcatcatcttcgtcttcatcgtcctcctcttcttctc |
12692673 |
T |
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