View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10391_low_7 (Length: 417)

Name: NF10391_low_7
Description: NF10391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10391_low_7
NF10391_low_7
[»] chr7 (5 HSPs)
chr7 (20-407)||(31013610-31014007)
chr7 (210-280)||(19974775-19974845)
chr7 (198-256)||(20001140-20001198)
chr7 (210-293)||(47606599-47606682)
chr7 (210-252)||(19981472-19981514)
[»] chr3 (10 HSPs)
chr3 (20-375)||(53058940-53059301)
chr3 (83-376)||(53067875-53068169)
chr3 (83-352)||(53340895-53341174)
chr3 (191-375)||(37418217-37418402)
chr3 (129-375)||(53062121-53062377)
chr3 (213-291)||(53972116-53972194)
chr3 (224-294)||(23224663-23224733)
chr3 (20-58)||(53340829-53340867)
chr3 (200-293)||(13451020-13451113)
chr3 (228-292)||(13450913-13450977)
[»] chr2 (1 HSPs)
chr2 (193-341)||(6687146-6687301)
[»] chr4 (1 HSPs)
chr4 (216-289)||(56164454-56164527)
[»] scaffold0543 (1 HSPs)
scaffold0543 (212-289)||(4129-4206)
[»] scaffold0492 (1 HSPs)
scaffold0492 (212-289)||(5675-5752)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 407
Target Start/End: Complemental strand, 31014007 - 31013610
Alignment:
Q  20 ttcagttcgtctttatattgctgcaataataagttgggttataaccttgggtttgcatgcagcacaagatttgaagcggaatgattgtattggcagggtg 119  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31014007 ttcagttcatctttgtattgctgcgataataagttgggttataaccttgggtttgcatgcagcacaagatttgaagcggaatgattgtattggcagggtg 31013908  T
Q  120 ttattgcatgatagcatgactgagtaaacatgacagcaaaga------gtggttgttttgatgaagacattgtgattggtgaaatcgagagtgaagactg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31013907 ttattgcatgatagcatgactgagtaaacatgacagcaaagacaaagagtggttgttttgatgaagacattgtgattggtgaaatcgagagtgaagactg 31013808  T
Q  214 agagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaatgt----gataattgagtccggaag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  31013807 agagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaatgtgacagataattgagtccggaag 31013708  T
Q  310 ggagctaaccctgtcgcactcttctattggaaacgatgatcgcagattcttcttcgacttggacatatatagcaattctgataatattattgcctttg 407  Q
    ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31013707 ggagctatccctgtcgcactcttctattggaatcgatgatcgctgattcttcttcgacttggacatatatagaaattctgataatattattgcctttg 31013610  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 19974775 - 19974845
Alignment:
Q  210 actgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaa 280  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||| | |  | |||||||||||||||    
T  19974775 actgagagccatagtggtttccatctctttgaaaggatgcttgtggcggcagattttttggttggtagaaa 19974845  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 20001140 - 20001198
Alignment:
Q  198 tcgagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggc 256  Q
    ||||||||| | ||||||||||||| ||||||||| ||||| || ||||||||||||||    
T  20001140 tcgagagtggaaactgagagccatattggtttccatctcttagagaggatgcttgtggc 20001198  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 47606599 - 47606682
Alignment:
Q  210 actgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaatgtga 293  Q
    ||||||||||||| ||| ||||| |||||||| ||||||||||| ||  || ||  ||||||||| ||||| || |||||||||    
T  47606599 actgagagccatagtgggttccatctctttgagaggatgcttgtagctgcgctgagtttggttgggagaaaagatagaatgtga 47606682  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 19981472 - 19981514
Alignment:
Q  210 actgagagccataatggtttccacctctttgaaaggatgcttg 252  Q
    ||||||||||||||||||||||| |||||||| |||| |||||    
T  19981472 actgagagccataatggtttccatctctttgagaggacgcttg 19981514  T

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Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 53059301 - 53058940
Alignment:
Q  20 ttcagttcgtctttatattgctgcaataataagttgggttataaccttgggtttgcatgcagcacaagatttgaagcggaatgattgtattggcagggtg 119  Q
    |||||||||||||| |||||||||||| ||||||| ||||||  | ||||||| | ||||||||||| ||||||||||||||||| |||||||||| |||    
T  53059301 ttcagttcgtctttgtattgctgcaatgataagtttggttatttcgttgggttggtatgcagcacaacatttgaagcggaatgatcgtattggcagtgtg 53059202  T
Q  120 ttattgcatgatagcatgactgagtaaacatgacagcaaagagtggttgttttgatgaagacattgtgattggtgaaatcga--gagtgaagactgagag 217  Q
    || |  |  |||||||||| |||||||||||||| |||||||||||||   || |||||| |  | || | | ||||||||   |||||| |||||||||    
T  53059201 ttgtcacgcgatagcatgattgagtaaacatgactgcaaagagtggtttcgttcatgaaggctgtttggtcgatgaaatcgttcgagtgaggactgagag 53059102  T
Q  218 ccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaatgt----gataattgagtccggaagggag 313  Q
    ||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||    ||||||||||||||||||||||    
T  53059101 ccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattgagtccggaagggag 53059002  T
Q  314 ctaaccctgtcgcactcttctattggaaacgatgatcgcagattcttcttcgacttggacat 375  Q
    ||||||||||| |||||||| ||||||| |||||||    | | ||||||||||||||||||    
T  53059001 ctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 53058940  T

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Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 83 - 376
Target Start/End: Complemental strand, 53068169 - 53067875
Alignment:
Q  83 acaagatttgaagcggaatgattgtattggcagggtgttattgcatgatagcatgactgagtaaacatgacagcaaagagtggttgttttgatgaagaca 182  Q
    |||| ||||||||||||||||| |||||||  | ||||| | ||  ||||||||||||||||||||   || ||||| ||||||||||||  ||||||      
T  53068169 acaacatttgaagcggaatgatcgtattggatgtgtgttgtcgcgcgatagcatgactgagtaaaccatactgcaaatagtggttgttttcgtgaagatt 53068070  T
Q  183 ttgtgattggtgaaatcgagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaagg 282  Q
     |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||    
T  53068069 atgtgatcggtgaaattgagagtgaagactgagagccataatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaagg 53067970  T
Q  283 agagaatgt----gataattgagtccggaagggagctaaccctgtcgcactcttctattggaaacgatgatcgcagattcttcttcgacttggacata 376  Q
    |||||||||    |||||| ||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |   |||||||||||||||||||    
T  53067969 agagaatgtgatagataatcgagtccggaagggagctaaccttgttgcgctcttctattggaatcgatgatcgccg---cttcttcgacttggacata 53067875  T

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Target: chr3; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 83 - 352
Target Start/End: Original strand, 53340895 - 53341174
Alignment:
Q  83 acaagatttgaagcggaatgattgtattggcagggtgttattgcatgatagcatgactgagtaaacatgacagcaaagagtggttgttttgatgaagaca 182  Q
    |||| |||||| |||||||||| |||||||||| ||||| | ||| ||||||| ||||||||||| ||||| ||||| ||||||| |||   ||||||      
T  53340895 acaacatttgaggcggaatgatagtattggcagtgtgttgtcgcacgatagcaagactgagtaaatatgactgcaaatagtggttatttccgtgaagatt 53340994  T
Q  183 ttgtgattggtgaaatcgagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaagg 282  Q
     |||||| ||| ||||||||||||| ||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  53340995 gtgtgatcggtaaaatcgagagtgaggactgagatacataatggtttccacctctttgagaggatgcttgtggcgacggtgtctttggttgggagaaagg 53341094  T
Q  283 agagaatgt----gataattgagtccggaagggagctaaccctgtcg------cactcttctattggaaacgatgatcgc 352  Q
    |||||||||    |||||||||||| |||||||||||||||||||||      |||||||||||||| | ||||||||||    
T  53341095 agagaatgtgacagataattgagtctggaagggagctaaccctgtcgtactcacactcttctattggtatcgatgatcgc 53341174  T

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Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 191 - 375
Target Start/End: Complemental strand, 37418402 - 37418217
Alignment:
Q  191 ggtgaaatcgagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaatg 290  Q
    |||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||     
T  37418402 ggtgaaatcgagggtgaagactgagagccacaatgggttccacctctttgagaggatgcttgtggcgacagtgtctttggttgggagaaaggagagaata 37418303  T
Q  291 tga----taattgagtccggaagggagctaaccctgtcgcactcttctattggaaacgatgatcgcagattcttcttcgacttggacat 375  Q
    |||    |||||||||| ||||||||||||||||||||||||| |||| |||||| | |||||||  |   ||||||||||||||||||    
T  37418302 tgacagataattgagtctggaagggagctaaccctgtcgcacttttctgttggaatccatgatcgttg---cttcttcgacttggacat 37418217  T

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Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 129 - 375
Target Start/End: Complemental strand, 53062377 - 53062121
Alignment:
Q  129 gatagcatgactgagtaaacatgacagcaaagagtggttgttttgatgaagacattgtgattggtgaaatcgagagtgaagactgagagccataatggtt 228  Q
    ||||||||||||||||||||||||| ||||||||  ||||| ||  |||||     ||| | |||||||||||||||||||||  |||||||||||||||    
T  53062377 gatagcatgactgagtaaacatgactgcaaagagatgttgtcttcgtgaagtttgggtggtcggtgaaatcgagagtgaagacatagagccataatggtt 53062278  T
Q  229 tccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaatgtga---------taattgagtccggaagggag-ctaac 318  Q
    |||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||          | ||||||| ||||||||| |||||    
T  53062277 tccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagatagttgagttgagtctggaagggagactaac 53062178  T
Q  319 cctgtcgcactcttctattggaaacgatgatcgcagattcttcttcgacttggacat 375  Q
    |||||| |||||||| ||||||| |||||||    | | ||||||||||||||||||    
T  53062177 cctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 53062121  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 53972116 - 53972194
Alignment:
Q  213 gagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaatgt 291  Q
    |||| ||||||||| |||||||||||||| |||||| |||||| | ||| |||||||||||| ||||| ||||| ||||    
T  53972116 gagatccataatggcttccacctctttgagaggatggttgtgggggcggagtctttggttggaagaaaagagagtatgt 53972194  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 23224663 - 23224733
Alignment:
Q  224 tggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaatgtgat 294  Q
    ||||||||| |||| ||| || ||||||||| || | ||||||||||| || ||| |||||||||||||||    
T  23224663 tggtttccatctctctgagagaatgcttgtgacggctgtgtctttggtgggaagacaggagagaatgtgat 23224733  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 53340829 - 53340867
Alignment:
Q  20 ttcagttcgtctttatattgctgcaataataagttgggt 58  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  53340829 ttcagttcgtctttgtatggctgcaataataagttgggt 53340867  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 13451020 - 13451113
Alignment:
Q  200 gagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaatgtga 293  Q
    |||||||| |||| | ||||||| ||  ||||| |||||||| ||||| ||||||||  |||  | ||||||||||||||| |||| |||||||    
T  13451020 gagagtgaggactaaaagccatagtgacttccatctctttgagaggatacttgtggcagcggcatgtttggttggtagaaaagagacaatgtga 13451113  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 13450913 - 13450977
Alignment:
Q  228 ttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaatgtg 292  Q
    ||||| |||||| | || || ||||||||| ||| || ||||||||| |||||||||||||||||    
T  13450913 ttccatctctttcacagaatacttgtggcggcggcgtgtttggttggaagaaaggagagaatgtg 13450977  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 193 - 341
Target Start/End: Complemental strand, 6687301 - 6687146
Alignment:
Q  193 tgaaatcgagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggcgacgg---tgtctttggttggtagaaaggagagaat 289  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||| |   ||||||||||||| ||||| ||||||||    
T  6687301 tgaaatcgagagttaagactgagagccataatggtttccatctcttcgagaggatgcttgtggcgacagtactgtctttggttggaagaaatgagagaat 6687202  T
Q  290 gtg----ataattgagtccggaagggagctaaccctgtcgcactcttctattggaa 341  Q
     ||    ||||||||||  ||||||||||||||||||||| ||| |||| ||||||    
T  6687201 atgacaaataattgagtatggaagggagctaaccctgtcgtactattcttttggaa 6687146  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 56164527 - 56164454
Alignment:
Q  216 agccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaat 289  Q
    ||||||||||| ||||||  ||| || |||| |||||||||||| | |||||||||||| ||||| ||||||||    
T  56164527 agccataatggattccactgcttcgagaggacgcttgtggcgaccgagtctttggttgggagaaaagagagaat 56164454  T

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Target: scaffold0543 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 4129 - 4206
Alignment:
Q  212 tgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaat 289  Q
    ||||||||||| ||| |||||||| ||||| |||||  |||||||| | | ||||||||| || |||||||| |||||    
T  4129 tgagagccatagtggcttccacctttttgataggattgttgtggcggcagcgtctttggtcggaagaaaggaaagaat 4206  T

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Target: scaffold0492 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 5675 - 5752
Alignment:
Q  212 tgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaat 289  Q
    ||||||||||| ||| |||||||| ||||| |||||  |||||||| | | ||||||||| || |||||||| |||||    
T  5675 tgagagccatagtggcttccacctttttgataggattgttgtggcggcagcgtctttggtcggaagaaaggaaagaat 5752  T

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