View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10391_low_9 (Length: 386)
Name: NF10391_low_9
Description: NF10391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10391_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 31101843 - 31101492
Alignment:
| Q |
18 |
aatagttcctgtgagattgttcacttggacactaaagtatttcaaattgatcaaatttcctatagaggcaggaattgatccagaaagtcgattatttcgc |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31101843 |
aatagttcctgtgagattgtttacttggacactaaagtatttcaaattgatcaaatttcctatagaggcaggaattgatccagaaagtcgattatttcgc |
31101744 |
T |
|
| Q |
118 |
aaaagcaataaagtgaggtttttcaagtttccaattgtggaaggaatgaatccagaaaggttattcatataaagtgcaagtacatccaaattaatcaagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31101743 |
aaaagcaataaagtgaggtttttcaagtttccaattgtggaaggaatgaatccagaaaggttattcatataaagtgcaagtacatccaaattaatcaagt |
31101644 |
T |
|
| Q |
218 |
tttgtactgaatcagggattgaaccagaaagactcatgttaaaaaggtagatcaaggtcaagctagacatgttccacaaggagtgaggaattggtccata |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31101643 |
tttgtactgaatcagggattgaaccagaaagactcatgttataaaggtagatcaaggtcaagctagacatgttccacaaggagtgaggaattggtccata |
31101544 |
T |
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| Q |
318 |
caacttggtgttattagcaaggatgagttgatttaatttgctcatgttccct |
369 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31101543 |
caacttggtgttattagcaaacatgagttgatttaatttgctcatgttccct |
31101492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 31139220 - 31138869
Alignment:
| Q |
18 |
aatagttcctgtgagattgttcacttggacactaaagtatttcaaattgatcaaatttcctatagaggcaggaattgatccagaaagtcgattatttcgc |
117 |
Q |
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||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||||| ||||||||||||||| || || ||||| ||| |
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| T |
31139220 |
aatagttcctgtgagattgttttcttggacactaaaggaatccaaattgatcaaatttcctatagtggcaggaattgatcctgacagacgattcattcct |
31139121 |
T |
|
| Q |
118 |
aaaagcaataaagtgaggtttttcaagtttccaattgtggaaggaatgaatccagaaaggttattcatataaagtgcaagtacatccaaattaatcaagt |
217 |
Q |
| |
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|||| ||| | |||||||||||||||||||||||||||||||||| |||||||||| ||| || ||||||||| ||| || ||||||||||| |
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| T |
31139120 |
aaaaacaaatattggaggtttttcaagtttccaattgtggaaggaatggttccagaaaggcgattgcgatcaagtgcaagctcattcacattaatcaagt |
31139021 |
T |
|
| Q |
218 |
tttgtactgaatcagggattgaaccagaaagactcatgttaaaaaggtagatcaaggtcaagctagacatgttccacaaggagtgaggaattggtccata |
317 |
Q |
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||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31139020 |
tttcgacagattcagggattgaaccagaaagactcatgttaaaaaggtagatcaaggtcaagctagacatgttccacaaggagtgaggaattggtccata |
31138921 |
T |
|
| Q |
318 |
caacttggtgttattagcaaggatgagttgatttaatttgctcatgttccct |
369 |
Q |
| |
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|||||||||||| ||||||||| ||||| |||||||||||||||||||||| |
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| T |
31138920 |
caacttggtgtttttagcaaggtagagtttatttaatttgctcatgttccct |
31138869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 31057408 - 31057057
Alignment:
| Q |
18 |
aatagttcctgtgagattgttcacttggacactaaagtatttcaaattgatcaaatttcctatagaggcaggaattgatccagaaagtcgattatttcgc |
117 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| | | || ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| | |
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| T |
31057408 |
aatagttccagtgagattgttttcttggacactgaggacttgcaaattgatcaaatttcctatagaggcaggaattggtccagaaagattattacttccc |
31057309 |
T |
|
| Q |
118 |
aaaagcaataaagtgaggtttttcaagtttccaattgtggaaggaatgaatccagaaaggttattcatataaagtgcaagtacatccaaattaatcaagt |
217 |
Q |
| |
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||| ||| | |||| |||||||||| |||||| |||||||||||| |||||||||||| ||| |||| |||||||||| | | |||||||| ||||| |
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| T |
31057308 |
aaatacaacttaatgagatttttcaagtctccaatagtggaaggaatggatccagaaaggtgattgatatcaagtgcaagttccttcaaattaaccaagt |
31057209 |
T |
|
| Q |
218 |
tttgtactgaatcagggattgaaccagaaagactcatgttaaaaaggtagatcaaggtcaagctagacatgttccacaaggagtgaggaattggtccata |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||| || ||||| | ||||||||||||||||||||||||||| || |||||||| ||| | |
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| T |
31057208 |
tttgtatggaatcagggattgaaccagaaagacctatgttatcaaagtagagtacggtcaagctagacatgttccacaaggaatgtggaattggaccaga |
31057109 |
T |
|
| Q |
318 |
caacttggtgttattagcaaggatgagttgatttaatttgctcatgttccct |
369 |
Q |
| |
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|| |||||||||||||| ||| | ||| || ||||||||||| ||||||| |
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| T |
31057108 |
catcttggtgttattagaaagaacaagtgtatctaatttgctcaagttccct |
31057057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 22 - 365
Target Start/End: Complemental strand, 31182931 - 31182588
Alignment:
| Q |
22 |
gttcctgtgagattgttcacttggacactaaagtatttcaaattgatcaaatttcctatagaggcaggaattgatccagaaagtcgattatttcgcaaaa |
121 |
Q |
| |
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||||| ||||||||||| |||||| ||||| | | |||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |
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| T |
31182931 |
gttccagtgagattgttttcttggagactaaggattaccaaattgatcaaatttcctatagaggcaggaattgatccagaaaaatgattgaatcccaaaa |
31182832 |
T |
|
| Q |
122 |
gcaataaagtgaggtttttcaagtttccaattgtggaaggaatgaatccagaaaggttattcatataaagtgcaagtacatccaaattaatcaagttttg |
221 |
Q |
| |
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||| | ||| |||||||||||||||||||||||||||||| |||||||||| ||| || ||||||||| ||| || |||||||||||||| |
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| T |
31182831 |
tcaaatattggagatttttcaagtttccaattgtggaaggaatggttccagaaaggcgattgcgatcaagtgcaagctcattcacattaatcaagttttc |
31182732 |
T |
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| Q |
222 |
tactgaatcagggattgaaccagaaagactcatgttaaaaaggtagatcaaggtcaagctagacatgttccacaaggagtgaggaattggtccatacaac |
321 |
Q |
| |
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|| || |||||||||||||||||||||||||||||| |||| |||| | |||||||||||||||||||||||||||| |||||||| ||| | | | |
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| T |
31182731 |
gacagattcagggattgaaccagaaagactcatgttataaagtaagatagtgttcaagctagacatgttccacaaggagtgtggaattggaccagaaacc |
31182632 |
T |
|
| Q |
322 |
ttggtgttattagcaaggatgagttgatttaatttgctcatgtt |
365 |
Q |
| |
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|| ||||||||| |||||| ||| ||||||||| |||||||| |
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| T |
31182631 |
tttgtgttattacaaaggataagtaaatttaatttactcatgtt |
31182588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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