View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10392_high_1 (Length: 602)
Name: NF10392_high_1
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 98 - 584
Target Start/End: Complemental strand, 40166878 - 40166394
Alignment:
| Q |
98 |
catttagatattgaagttgagcacgagatattggtaaagaattcgagcacattatgcaagtaatcaacaattgaaattttaactcttatgtgcataaaaa |
197 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40166878 |
catttagatattgaagttgagcacgacatattggtaaagaattcgagcacattatgcaagtaatcaacaattgaaattttaactcttacgtgcataaaaa |
40166779 |
T |
|
| Q |
198 |
atatttggttggaatacgaaactcattttatatatccaacaaatgttacctccagtacacgaacacatacatactgtacaagnnnnnnnnnnnncttctt |
297 |
Q |
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| T |
40166778 |
atatttggttggaatacgaaactcattttatatatccaacaaatgttacctccagtacacgaacacatacatactgtacaagttttttttc---ctcctt |
40166682 |
T |
|
| Q |
298 |
cttctaattattgcccaatcaaattggtgatagaatccaccatctatttttt-gggatagtgttgtacattgcgagaagaattctcgcgagtgaatcacg |
396 |
Q |
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| T |
40166681 |
cttctaattattgcctgatcaaattggtgatagaatccaccatctatttttttgggatagtgttgtacatcgcgagatttcttctcgcgagtgaatcaca |
40166582 |
T |
|
| Q |
397 |
aatatgcaaatgcttttagaacaataaaaatataggctccacttaccataaaagcagttatcgaaataaaaggaggtgttatttgtctgtcgtaaatgat |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
40166581 |
aatatgcaaatgcttttagaacaataaaaatataggctccacttaccataaaggcagttgtcgaaataaaaggaggtgttatttgtctgtcgtgaatgat |
40166482 |
T |
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| Q |
497 |
tttgtcgctgtatgaagcattatccannnnnnngtctatctctattcaaattctttatttgtttcaacaagaatggagatggtctaac |
584 |
Q |
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| T |
40166481 |
tttgtcgctgtatgaagcattatccatttttttgtctatctctattcaaattctttatttgtttcaacaagaatggagatggtctaac |
40166394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 40166972 - 40166942
Alignment:
| Q |
1 |
tcctcctcatattcaagtgagtagttccttg |
31 |
Q |
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| T |
40166972 |
tcctcctcatattcaagtgagtagttccttg |
40166942 |
T |
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