View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10392_high_11 (Length: 330)
Name: NF10392_high_11
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 31822293 - 31822006
Alignment:
| Q |
18 |
tcaaaatgtttttctatgattccttttctcaatcaaacccttatggttcttttggctctaattctccaaattctcagaaactcaacattcaccaaatcct |
117 |
Q |
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| T |
31822293 |
tcaaaatgtttttctatgatttcttttctcaatcaaaccattatggctcttttggctctaattctccaaattctcataaactcaacattcaccatatcct |
31822194 |
T |
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| Q |
118 |
tcatttggctaattagttagcatctccaatcttaataagaatttatgcatatgattcagcttcattcatttgaatcatctcatattgtcttctcaaagct |
217 |
Q |
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|||||||||||||||||||||||| |||||||| | ||||||| ||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
31822193 |
tcatttggctaattagttagcatcaccaatcttgagaagaatt-atgcaaatgattcagcttcattcatctggatcatctcatattgtcttctcaaagct |
31822095 |
T |
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| Q |
218 |
taaagccatatcttcttgagattatttcgtctccaccatacacctttcttgagtgtatctcatgcaccctttgttgtctcatcttcaat |
306 |
Q |
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| T |
31822094 |
taaagccatatcttcttgagattattttgtctccaccatacacctttcttgagtgtatctcatgcaccctttgttgtctcatcttcaat |
31822006 |
T |
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Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 27737908 - 27737994
Alignment:
| Q |
18 |
tcaaaatgtttttctatgattccttttctcaatcaaacccttatggttcttttggctctaattctccaaattctcagaaactcaaca |
104 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| |||||||||| |
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| T |
27737908 |
tcaaaatgtttttctacgattccttttctcaatcaaagccttatggctctattggctctaattctccaaattctcaaaaactcaaca |
27737994 |
T |
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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 36472579 - 36472648
Alignment:
| Q |
18 |
tcaaaatgtttttctatgattccttttctcaatcaaacccttatggttcttttggctctaattctccaaa |
87 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||| || |||||||||| |||||||||||| |
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| T |
36472579 |
tcaaaatgtttttctatgattccttttgtcaatcaaagccttacggctcttttggctttaattctccaaa |
36472648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 30372021 - 30372093
Alignment:
| Q |
21 |
aaatgtttttctatgattccttttctcaatcaaacccttatggttcttttggctctaattctccaaattctca |
93 |
Q |
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|||||||| | | ||| ||||||||||||||||| |||||||| ||||||| || ||||||| ||||||||| |
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| T |
30372021 |
aaatgtttctatgtgaatccttttctcaatcaaagccttatggctcttttgtttccaattctctaaattctca |
30372093 |
T |
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