View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10392_high_21 (Length: 211)

Name: NF10392_high_21
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10392_high_21
NF10392_high_21
[»] chr8 (4 HSPs)
chr8 (19-211)||(7020973-7021165)
chr8 (24-211)||(7035286-7035470)
chr8 (134-211)||(7028691-7028768)
chr8 (33-211)||(7078460-7078635)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 7020973 - 7021165
Alignment:
Q  19 atacccgcagaaatttccttagccatgtccttgtggctttttcgcgaaagcaaataaatgtattttctgacaagaaacttcaagaaggagatgaaatatc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7020973 atacccgcagaaatttccttagccatgtccttgtggctttttcgcgaaagcaaataaatgtattttctgacaagaaacttgaagaaggagatgaaatatc 7021072  T
Q  119 accaaaacttaatgaagcaattgaaaaatcattcattcatttggtcatattctctccaaaattttcatattcacattggtgtttggatgagct 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7021073 accaaaacttaatgaagcaattgaaaaatcattcattcatttggtcatattctctccaaacttttcatattcacattggtgtttggatgagct 7021165  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 211
Target Start/End: Original strand, 7035286 - 7035470
Alignment:
Q  24 cgcagaaatttccttagccatgtccttgtggctttttcgcgaaagcaaataaatgtattttctgacaagaaacttcaagaaggagatgaaatatcaccaa 123  Q
    |||| |||||||||||||||||| |||| |||||||||||||||| ||||    || |||||||||||||| |||| || |||||| |||||||||        
T  7035286 cgcaaaaatttccttagccatgttcttgaggctttttcgcgaaagaaaattgtagtcttttctgacaagaagcttcgaggaggagacgaaatatcag--- 7035382  T
Q  124 aacttaatgaagcaattgaaaaatcattcattcatttggtcatattctctccaaaattttcatattcacattggtgtttggatgagct 211  Q
    ||||| ||  |||||||||||||||||| |||   ||||||||||| || ||||| ||| ||| ||||||||||||||||||||||||    
T  7035383 aacttcatacagcaattgaaaaatcattgatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagct 7035470  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 7028691 - 7028768
Alignment:
Q  134 agcaattgaaaaatcattcattcatttggtcatattctctccaaaattttcatattcacattggtgtttggatgagct 211  Q
    |||||||||||||||||| |||   ||||||||||| |||||||| ||| ||| |||||||||||||||||| |||||    
T  7028691 agcaattgaaaaatcattgatttcattggtcatattttctccaaactttgcatcttcacattggtgtttggacgagct 7028768  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 211
Target Start/End: Complemental strand, 7078635 - 7078460
Alignment:
Q  33 ttccttagccatgtccttgtggctttttcgcgaaagcaaataaatgtattttctgacaagaaacttcaagaaggagatgaaatatcaccaaaacttaatg 132  Q
    ||||||||||||||||| |  ||||| |||||||||  |||   ||| ||||||||||| || ||| ||  |||||||||| ||||| |||   || |      
T  7078635 ttccttagccatgtcctcgaagctttgtcgcgaaagagaatcgttgttttttctgacaaaaagcttaaaacaggagatgaattatcagcaa---ttcaaa 7078539  T
Q  133 aagcaattgaaaaatcattcattcatttggtcatattctctccaaaattttcatattcacattggtgtttggatgagct 211  Q
     ||||||||||||||||||||||   ||||| |||||||||||||| ||| ||| |||| |||||||| |||| |||||    
T  7078538 gagcaattgaaaaatcattcatttcattggttatattctctccaaactttgcatcttcatattggtgtatggaggagct 7078460  T

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