View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10392_low_1 (Length: 785)
Name: NF10392_low_1
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 571; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 132 - 770
Target Start/End: Original strand, 36675230 - 36675877
Alignment:
| Q |
132 |
ccttcttgacttcaggaaatgtcatagccggctgcatgttcttgtctccagtgtaagattatttttaaatctcttcccgcatttttcaattttaacgtaa |
231 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
36675230 |
ccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaacctaa |
36675329 |
T |
|
| Q |
232 |
aaattaac---------atttgttgttaattttttccttcatgtccttaattatgcaggccaacatttgttgggatatgcaagaaaggatcagtggaaca |
322 |
Q |
| |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675330 |
aaaataacaatactaacatttgttgttaattttttccttcatgtccttaattatgcaggccaacatttgttgggatatgcaagaaaggatcagtggaaca |
36675429 |
T |
|
| Q |
323 |
atactcacccgtaccatacctagccacgttgatgaactgcatggtttggactctctacgggttgccaatggtgcaccctcacagtttccttgtggtgacc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675430 |
atactcacccgtaccatacctagccacgttgatgaactgcatggtttggactctctacgggttgccaatggtgcaccctcacagtttccttgtggtgacc |
36675529 |
T |
|
| Q |
423 |
atcaatggagcaggatgtgtggttgagatcatctatatcacactctttctcatatattctgaccgtaaaaagaggctcaaagtctttcttggtttactat |
522 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675530 |
atcaatggtgcaggatgtgtggttgagatcatctatatcacactctttctcatatattctgaccgtaaaaagaggctcaaagtctttcttggtttactat |
36675629 |
T |
|
| Q |
523 |
tggagcttattttcattttccttctctcatttgtttcattgactatgcttcacactgttaacaaacgttctgctgttgttgggaccatatgcatgctatt |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36675630 |
tggagcttattttcattttccttctctcatttgtttcattgactatgcttcacactgttaacaaacgttctgctgttgttgggaccatatgcatgctatt |
36675729 |
T |
|
| Q |
623 |
taatattggcatgtatgcttcacctttgtctattatggttagtacttaatatatatcatgtttannnnnnnatttaagataaaattggttaatatatatg |
722 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
36675730 |
taatattggcatgtatgcttcacctttgtctattatggttagtacttaatatatatcatgtttatttttttatttaagataaaattggttaatatatatg |
36675829 |
T |
|
| Q |
723 |
gattggcttaatcatgtaatcttaattaatataatctatggttgcaga |
770 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36675830 |
gattggcttaatcatgtgatcttaattaatataatctatggttgcaga |
36675877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 132 - 770
Target Start/End: Original strand, 36685312 - 36685959
Alignment:
| Q |
132 |
ccttcttgacttcaggaaatgtcatagccggctgcatgttcttgtctccagtgtaagattatttttaaatctcttcccgcatttttcaattttaacgtaa |
231 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
36685312 |
ccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaacctaa |
36685411 |
T |
|
| Q |
232 |
aaattaac---------atttgttgttaattttttccttcatgtccttaattatgcaggccaacatttgttgggatatgcaagaaaggatcagtggaaca |
322 |
Q |
| |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685412 |
aaaataacaatactaacatttgttgttaattttttccttcatgtccttaattatgcaggccaacatttgttgggatatgcaagaaaggatcagtggaaca |
36685511 |
T |
|
| Q |
323 |
atactcacccgtaccatacctagccacgttgatgaactgcatggtttggactctctacgggttgccaatggtgcaccctcacagtttccttgtggtgacc |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685512 |
atactcacccgtaccatacctagccacgttgatgaactgcatggtttggactctctacgggttgccaatggtgcaccctcacagtttccttgtggtgacc |
36685611 |
T |
|
| Q |
423 |
atcaatggagcaggatgtgtggttgagatcatctatatcacactctttctcatatattctgaccgtaaaaagaggctcaaagtctttcttggtttactat |
522 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36685612 |
atcaatggtgcaggatgtgtggttgagatcatctatatcacactctttctcatatattctgaccgtaaaaagaggctcaaagtctttcttggtttactat |
36685711 |
T |
|
| Q |
523 |
tggagcttattttcattttccttctctcatttgtttcattgactatgcttcacactgttaacaaacgttctgctgttgttgggaccatatgcatgctatt |
622 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685712 |
tggagcttattttcattttccttctctcatttgtttcattgactatgcttcacactgttaacaaacgttctgctgttgttgggaccatatgcatgctatt |
36685811 |
T |
|
| Q |
623 |
taatattggcatgtatgcttcacctttgtctattatggttagtacttaatatatatcatgtttannnnnnnatttaagataaaattggttaatatatatg |
722 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
36685812 |
taatattggcatgtatgcttcacctttgtctattatggttagtacttaatatatatcatgtttatttttttatttaagataaaattggttaatatatatg |
36685911 |
T |
|
| Q |
723 |
gattggcttaatcatgtaatcttaattaatataatctatggttgcaga |
770 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36685912 |
gattggcttaatcatgtgatcttaattaatataatctatggttgcaga |
36685959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 36675117 - 36675166
Alignment:
| Q |
15 |
cataggtgggtcatactaatttgctttttaagctttcattaaaaacatat |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675117 |
cataggtgggtcatactaatttgctttttaagctttcattaaaaacatat |
36675166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 278 - 469
Target Start/End: Complemental strand, 42224459 - 42224268
Alignment:
| Q |
278 |
caggccaacatttgttgggatatgcaagaaaggatcagtggaacaatactcacccgtaccatacctagccacgttgatgaactgcatggtttggactctc |
377 |
Q |
| |
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||||||||| ||| ||| |||||| ||||||||||| ||||| |||| |||||| | |||||||||||| || | | ||||||||||| ||||| || |
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| T |
42224459 |
caggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaactgcatggtatggacacta |
42224360 |
T |
|
| Q |
378 |
tacgggttgccaatggtgcaccctcacagtttccttgtggtgaccatcaatggagcaggatgtgtggttgagatcatctatatcacactctt |
469 |
Q |
| |
|
||||| |||| ||||||||||| |||| | || ||||| |||||||| || |||| |||||| |||||||||| ||| |||| ||||| |
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|
| T |
42224359 |
tacggtctgcctatggtgcacccggacagcgtgctcgtggtaaccatcaacggctcaggttgtgtgattgagatcatatatgtcacgctctt |
42224268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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