View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10392_low_10 (Length: 402)
Name: NF10392_low_10
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 36532115 - 36531749
Alignment:
| Q |
18 |
gcagagattgatgaatatagcattaatgatagtcctattgagcaagtgaggctaacagttccgatcactgatgacccttctcagccagcgctaacattcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36532115 |
gcagagattgatgaatatagcattaatgatagtcctattgagcaagtgaggctaacagttccgatcaccgatgacccttctcagccagcgctaacattcc |
36532016 |
T |
|
| Q |
118 |
ggacatgggttctagggttagcatcatgtattctccttgcatttgtgaaccagtttttaggctacagaaccaaccctttgaaaatcacttctgtctcggc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36532015 |
ggacatgggttctagggttagcatcatgtattctccttgcatttgtgaaccagtttttaggctacagaaccaaccctttgaaaatcacttctgtctcggc |
36531916 |
T |
|
| Q |
218 |
tcagattattgccctcccacttgggaaacttatggctgcaacacttcccacaaaaccaattcaagtaccttttacaacatggtctttttcgttgaacccg |
317 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36531915 |
tcagattattgccctgccacttgggaaacttatggctgcaacacttcccacaaaaccaattcaagtaccttttacaacatggtctttttcgttgaacccg |
36531816 |
T |
|
| Q |
318 |
gggccattctctttgaaagaacatgtgttgattaccatctttgctagctcgggatctagtagtgttt |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36531815 |
gggccattctctttgaaagaacatgtgttgattaccatctttgctagctcgggatctagtggtgttt |
36531749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 36525282 - 36524925
Alignment:
| Q |
18 |
gcagagattgatgaatatagcattaatgatagtcctattgagcaagtgaggctaacagttccgatcactgatgacccttctcagccagcgctaacattcc |
117 |
Q |
| |
|
||||||| |||||||| | ||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36525282 |
gcagagaaagatgaatacaacattaatgatagtcccattgagcaagtgaggttaacagttccaatcactgatgacccttctcagccagcactaacattca |
36525183 |
T |
|
| Q |
118 |
ggacatgggttctagggttagcatcatgtattctccttgcatttgtgaaccagtttttaggctacagaaccaaccctttgaaaatcacttctgtctcggc |
217 |
Q |
| |
|
|||||||| ||||||| ||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| || || |
|
|
| T |
36525182 |
ggacatggattctaggcttagcttcatgtgtgctccttgcatttgtgaaccagttcttaggctacagaaccaaccctttgagaatcacttctgtttcagc |
36525083 |
T |
|
| Q |
218 |
tcagattattgccctcccacttgggaaacttatggctgcaacacttcccacaaaaccaattcaagtaccttttacaacatggtctttttcgttgaacccg |
317 |
Q |
| |
|
|||||| || | ||||||||||| | |||||||||||||||||||||||||||||||||||| | ||||| ||||| || | |||||| ||||| ||| |
|
|
| T |
36525082 |
tcagatcatcacactcccacttggaaggcttatggctgcaacacttcccacaaaaccaattcaaatccctttcacaacctgttatttttctttgaatccg |
36524983 |
T |
|
| Q |
318 |
gggccattctctttgaaagaacatgtgttgattaccatctttgctagctcgggatcta |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
36524982 |
gggccattctctttgaaagaacatgtgttgatcaccatctttgctagctcaggatcta |
36524925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 36537727 - 36537369
Alignment:
| Q |
18 |
gcagagattgatgaatatagcattaatgatagtcctattgagcaagtgaggctaacagttccgatcactgatgacccttctcagccagcgctaacattcc |
117 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || || |||| |
|
|
| T |
36537727 |
gcagagacagatgaatatagcattgatgattctcctattgagcaagtgaggctaacagttccaatcactgatgacccttcacagccagcacttactttcc |
36537628 |
T |
|
| Q |
118 |
ggacatgggttctagggttagcatcatgtattctccttgcatttgtgaaccagtttttaggctacagaaccaaccctttgaaaatcacttctgtctcggc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||||| || |
|
|
| T |
36537627 |
ggacatgggttctagggttagcatcatgtgtgctccttgcatttatgaaccaatttttaggatacaaaaccaaccctttgaaaatcacttctgtctcagc |
36537528 |
T |
|
| Q |
218 |
tcagattattgccctcccacttgggaaacttatggctgcaacacttcccacaaaaccaattcaagtaccttttacaacatggtctttttcgttgaacccg |
317 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||| |||| | | ||||||||||||| || |
|
|
| T |
36537527 |
tcagattattaccctcccacttgggaaacttatggctgcaacacttcccataaaaacaattcaagtccctttcacaagtttgactttttcgttgaatcca |
36537428 |
T |
|
| Q |
318 |
gggccattctctttgaaagaacatgtgttgattaccatctttgctagctcgggatctag |
376 |
Q |
| |
|
||| |||||||| |||| |||||||| ||||| | ||||||||||| ||| |||||||| |
|
|
| T |
36537427 |
gggtcattctctgtgaaggaacatgttttgatcagcatctttgctacctcaggatctag |
36537369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 50 - 270
Target Start/End: Original strand, 42071950 - 42072170
Alignment:
| Q |
50 |
tcctattgagcaagtgaggctaacagttccgatcactgatgacccttctcagccagcgctaacattccggacatgggttctagggttagcatcatgtatt |
149 |
Q |
| |
|
|||||| |||||||| || |||||||| | || || || |||||| | || ||||| |||||||| ||||||||||| | || || | || || ||| |
|
|
| T |
42071950 |
tcctatagagcaagtcagactaacagtgtcaataacagacgaccctacacaaccagcactaacatttaggacatgggttattggttttgtgtcttgcatt |
42072049 |
T |
|
| Q |
150 |
ctccttgcatttgtgaaccagtttttaggctacagaaccaaccctttgaaaatcacttctgtctcggctcagattattgccctcccacttgggaaactta |
249 |
Q |
| |
|
|||||| ||||||||||| || || || | ||||||||||||| || || ||||||||||| || ||||||||||| |||||| |||| ||||| | |
|
|
| T |
42072050 |
gcccttgcctttgtgaaccaattctttggattcagaaccaaccctctgtctattacttctgtctcagcacagattattgctctcccagttggaaaactaa |
42072149 |
T |
|
| Q |
250 |
tggctgcaacacttcccacaa |
270 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
42072150 |
tggctgcaacacttccaacaa |
42072170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 270
Target Start/End: Original strand, 42055849 - 42055968
Alignment:
| Q |
151 |
tccttgcatttgtgaaccagtttttaggctacagaaccaaccctttgaaaatcacttctgtctcggctcagattattgccctcccacttgggaaacttat |
250 |
Q |
| |
|
||||||| ||||||||||| || || || ||||||||||||||| ||| |||||| ||||||| || |||||| || | |||||| |||| ||||| || |
|
|
| T |
42055849 |
tccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacagattgtttctctcccaattggaaaactaat |
42055948 |
T |
|
| Q |
251 |
ggctgcaacacttcccacaa |
270 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
42055949 |
ggctgcaacacttccaacaa |
42055968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 270
Target Start/End: Original strand, 42080999 - 42081118
Alignment:
| Q |
151 |
tccttgcatttgtgaaccagtttttaggctacagaaccaaccctttgaaaatcacttctgtctcggctcagattattgccctcccacttgggaaacttat |
250 |
Q |
| |
|
||||||| ||||||||||| || || || ||||||||||||||| ||| |||||| ||||||| || |||||| || | |||||| |||| ||||| || |
|
|
| T |
42080999 |
tccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacagattgtttctctcccaattggaaaactaat |
42081098 |
T |
|
| Q |
251 |
ggctgcaacacttcccacaa |
270 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
42081099 |
ggctgcaacacttccaacaa |
42081118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University