View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10392_low_11 (Length: 394)
Name: NF10392_low_11
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 49289829 - 49289450
Alignment:
| Q |
1 |
cactggcctttctgaaaccatctttgttactctctccatnnnnnnnnnnnnatgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49289829 |
cactggcctttctgaaaccatctttgttactctctccattatatata----atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagt |
49289734 |
T |
|
| Q |
101 |
tatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttgttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49289733 |
tatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggcttgttgttg |
49289634 |
T |
|
| Q |
201 |
ggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtccacttttactacta |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49289633 |
gaaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattgatcaattaagtccacttttactacta |
49289534 |
T |
|
| Q |
301 |
gctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagac-aagtcctttg |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49289533 |
gctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagacaaagtcctttg |
49289450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 49296780 - 49296401
Alignment:
| Q |
1 |
cactggcctttctgaaaccatctttgttactctctccatnnnnnnnnnnnnatgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49296780 |
cactggcctttctgaaaccatctttgttactctctccattatatata----atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagt |
49296685 |
T |
|
| Q |
101 |
tatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttgttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49296684 |
tatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggcttgttgttg |
49296585 |
T |
|
| Q |
201 |
ggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtccacttttactacta |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49296584 |
gaaaagaaaagtagaaaagtggagaatcgtcgattagatgtttgggtcactttcaaaatcattgaaagtgattgatcaattaagtccacttttactacta |
49296485 |
T |
|
| Q |
301 |
gctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagac-aagtcctttg |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49296484 |
gctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagacaaagtcctttg |
49296401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 49303510 - 49303232
Alignment:
| Q |
1 |
cactggcctttctgaaaccatctttgttactctctccatnnnnnnnnnnnnatgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49303510 |
cactggcctttctgaaaccatctttgttactctctccattatatata----atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagt |
49303415 |
T |
|
| Q |
101 |
tatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttgttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
49303414 |
tatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggctt---gttg |
49303318 |
T |
|
| Q |
201 |
ggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||||||||| |
|
|
| T |
49303317 |
ggaaagaaaagtagaaaagtggagaatcgtccattagatatttgggtcattttcaaaatcgttgaaagtgattgatcaattaagtc |
49303232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University