View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10392_low_14 (Length: 382)
Name: NF10392_low_14
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 363
Target Start/End: Original strand, 580501 - 580849
Alignment:
| Q |
15 |
atcaactttaacaccaactcacccaaatcttggcgcaatgttcatcttgaattccccctcctaacaaaatttgaggctaaaaactgcgcttggtttgttg |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580501 |
atcaactttaacaccgactcacccaaatcttggcgcaatgttcatcttgaattccctctcctaacaaaatttgaggctaaaaactgcgcttggtttgttg |
580600 |
T |
|
| Q |
115 |
atacatctttggttatgatatacgcgcctctacttgaaagcatttcaatcgaacatagcgtcggtgttccttgtaaacgtgacaaatcatttatctgctt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580601 |
atacatctttggttatgatatacgcgcctctacttgaaagcatttcaatcgaacatagcgtcggtgttccttgtaaacgtgacaaatcatttatctgctt |
580700 |
T |
|
| Q |
215 |
ccctgattctgaggatctgaaagaattcagtttttgcggttttgatatatcacaaaacattataattaagtccccatgccatgcttcggctaaaatcaat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
580701 |
ccctgattctgaggatctgaaagaattcagtttttgcggttttgatatatcacaaaacattataattaagtccccatgccatgcttcagctaaaatcaat |
580800 |
T |
|
| Q |
315 |
ttatatgagagccaacactttgtaagttatatgtcagatttccatgctg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580801 |
ttatatgagagccaacactttgtaagttatatgtcagatttccatgctg |
580849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 325
Target Start/End: Original strand, 1214316 - 1214381
Alignment:
| Q |
260 |
tatatcacaaaacattataattaagtccccatgccatgcttcggctaaaatcaatttatatgagag |
325 |
Q |
| |
|
|||| ||||| ||||| |||| | |||||||||||||||||| ||||||||| |||| ||||||| |
|
|
| T |
1214316 |
tataccacaacacattttaatgacgtccccatgccatgcttctactaaaatcattttacatgagag |
1214381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 1200763 - 1200807
Alignment:
| Q |
66 |
ttccccctcctaacaaaatttgaggctaaaaactgcgcttggttt |
110 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
1200763 |
ttcccactcctaacaaaatttgaggccaaaaactgtgattggttt |
1200807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 8192831 - 8192727
Alignment:
| Q |
66 |
ttccccctcctaacaaaatttgaggctaaaaactgcgcttggtttgttgatacatctttggttatgatatacgcgcctctacttgaaagcatttcaatcg |
165 |
Q |
| |
|
||||| || ||||||||||||||| | |||||||||||||||||||||||| || ||| ||| ||| | || |||||||||||||| ||||| || | |
|
|
| T |
8192831 |
ttcccacttctaacaaaatttgagaccaaaaactgcgcttggtttgttgatgcaacttgggtctctatagatgctcctctacttgaaagtatttccattg |
8192732 |
T |
|
| Q |
166 |
aacat |
170 |
Q |
| |
|
||||| |
|
|
| T |
8192731 |
aacat |
8192727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University