View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10392_low_15 (Length: 374)
Name: NF10392_low_15
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 49296801 - 49297157
Alignment:
| Q |
1 |
atgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagataccaagagggagagagattgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296801 |
atgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagataccaagagggagagagattgaa |
49296900 |
T |
|
| Q |
101 |
caagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagccaatcaagttatgagtcttcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296901 |
caagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagccaatcaagttatgagtcttcatc |
49297000 |
T |
|
| Q |
201 |
ttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcac---caggctcacacaaatctacttaataataataagttgac |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49297001 |
ttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcaccagcaggctcacacaaatctacttaataataataagttgac |
49297100 |
T |
|
| Q |
298 |
cttttttggttatatattatatagagaggcaatgttgagttaatcttagagattatgg |
355 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297101 |
cttttttggttatata-tatatagagaggcaatgttgagttaatcttagagattatgg |
49297157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 49289850 - 49290206
Alignment:
| Q |
1 |
atgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagataccaagagggagagagattgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289850 |
atgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagataccaagagggagagagattgaa |
49289949 |
T |
|
| Q |
101 |
caagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagccaatcaagttatgagtcttcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289950 |
caagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagccaatcaagttatgagtcttcatc |
49290049 |
T |
|
| Q |
201 |
ttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcac---caggctcacacaaatctacttaataataataagttgac |
297 |
Q |
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| T |
49290050 |
ttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcaccagcaggctcacacaaatctacttaataataataagttgac |
49290149 |
T |
|
| Q |
298 |
cttttttggttatatattatatagagaggcaatgttgagttaatcttagagattatgg |
355 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
49290150 |
cttttttggttatata-tatagagagaggcaatgttgagttaatcttagagattatgg |
49290206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 49303531 - 49303788
Alignment:
| Q |
1 |
atgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagataccaagagggagagagattgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303531 |
atgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagataccaagagggagagagattgaa |
49303630 |
T |
|
| Q |
101 |
caagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagccaatcaagttatgagtcttcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303631 |
caagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagccaatcaagttatgagtcttcatc |
49303730 |
T |
|
| Q |
201 |
ttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctca |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49303731 |
ttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctca |
49303788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 204
Target Start/End: Complemental strand, 6568077 - 6567878
Alignment:
| Q |
2 |
tgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatgaacttgatgagataccaagagggagagagattgaac |
101 |
Q |
| |
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||||||||| |||| ||||| || || || || |||||||||| |||||||||| ||| |||||||||||||||| |||||||||| ||||||| |
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| T |
6568077 |
tgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatgaacttgatgagatgagtggagggagagacattgaac |
6567978 |
T |
|
| Q |
102 |
aagcacttatttcaagacttggttcttctccatctgttccaactgttttcattggtggtgagcttgttggtggagccaatcaagttatgagtcttcatct |
201 |
Q |
| |
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|||||||| | ||| || || | | || ||||| || |||| ||||||||||||||||||||||||||||| ||| |||||||||| ||||| || |
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| T |
6567977 |
aagcactttt---aaggctaggatgtaacccttctgtgcctgctgtgttcattggtggtgagcttgttggtggagctaatgaagttatgagccttcacct |
6567881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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