View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10392_low_19 (Length: 324)

Name: NF10392_low_19
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10392_low_19
NF10392_low_19
[»] chr6 (10 HSPs)
chr6 (159-310)||(15005223-15005374)
chr6 (1-75)||(15005065-15005139)
chr6 (1-75)||(15889865-15889939)
chr6 (1-75)||(22585705-22585779)
chr6 (1-75)||(22590536-22590610)
chr6 (232-310)||(26506720-26506798)
chr6 (265-310)||(15892977-15893022)
chr6 (175-236)||(15890037-15890097)
chr6 (1-66)||(17375078-17375143)
chr6 (4-56)||(25640717-25640769)
[»] scaffold0116 (1 HSPs)
scaffold0116 (175-310)||(29707-29854)
[»] chr2 (6 HSPs)
chr2 (175-310)||(25601640-25601787)
chr2 (4-68)||(25601893-25601957)
chr2 (232-307)||(14906842-14906917)
chr2 (232-307)||(23819857-23819932)
chr2 (15-75)||(14906619-14906679)
chr2 (15-75)||(23820095-23820155)
[»] chr4 (13 HSPs)
chr4 (175-310)||(34394873-34395020)
chr4 (163-310)||(19559142-19559300)
chr4 (232-310)||(34196595-34196673)
chr4 (236-310)||(16225559-16225633)
chr4 (1-67)||(19559393-19559459)
chr4 (232-307)||(10488348-10488423)
chr4 (232-310)||(26679814-26679892)
chr4 (232-307)||(16328328-16328403)
chr4 (16-75)||(34395119-34395178)
chr4 (175-213)||(34177965-34178003)
chr4 (15-75)||(10488586-10488646)
chr4 (15-75)||(26680056-26680116)
chr4 (31-75)||(49071748-49071792)
[»] chr3 (14 HSPs)
chr3 (163-310)||(18969713-18969871)
chr3 (164-310)||(39656120-39656278)
chr3 (175-310)||(48421353-48421500)
chr3 (232-310)||(22274822-22274900)
chr3 (15-75)||(18969943-18970003)
chr3 (4-75)||(13838758-13838829)
chr3 (15-69)||(39656371-39656425)
chr3 (4-75)||(15468671-15468742)
chr3 (4-75)||(22275063-22275134)
chr3 (4-75)||(48421599-48421670)
chr3 (261-311)||(13838516-13838566)
chr3 (232-309)||(16744686-16744763)
chr3 (232-307)||(2449629-2449704)
chr3 (15-75)||(2449417-2449477)
[»] scaffold0075 (2 HSPs)
scaffold0075 (164-310)||(4562-4719)
scaffold0075 (4-75)||(4806-4877)
[»] scaffold1734 (2 HSPs)
scaffold1734 (175-310)||(1015-1162)
scaffold1734 (4-75)||(1261-1332)
[»] scaffold0507 (2 HSPs)
scaffold0507 (175-310)||(4147-4292)
scaffold0507 (4-75)||(1663-1734)
[»] scaffold0021 (1 HSPs)
scaffold0021 (175-310)||(22368-22515)
[»] chr5 (10 HSPs)
chr5 (232-310)||(25004593-25004671)
chr5 (4-75)||(2031672-2031743)
chr5 (4-75)||(17471910-17471981)
chr5 (232-310)||(17472145-17472223)
chr5 (232-310)||(2031430-2031508)
chr5 (10-75)||(25004838-25004903)
chr5 (232-307)||(25900808-25900883)
chr5 (232-310)||(4200383-4200461)
chr5 (232-310)||(21233930-21234008)
chr5 (15-75)||(25900584-25900644)
[»] scaffold0063 (2 HSPs)
scaffold0063 (163-310)||(44432-44590)
scaffold0063 (1-75)||(44273-44347)
[»] chr8 (15 HSPs)
chr8 (163-310)||(23217656-23217814)
chr8 (2-75)||(23217899-23217972)
chr8 (1-69)||(22321605-22321673)
chr8 (163-308)||(22321764-22321921)
chr8 (4-75)||(41507131-41507202)
chr8 (232-310)||(2544578-2544656)
chr8 (4-75)||(24929119-24929190)
chr8 (232-307)||(5237873-5237948)
chr8 (232-307)||(24661650-24661725)
chr8 (232-307)||(43685332-43685407)
chr8 (232-310)||(22907785-22907863)
chr8 (4-56)||(21259650-21259702)
chr8 (15-75)||(22907561-22907621)
chr8 (4-56)||(22981232-22981284)
chr8 (15-75)||(43685570-43685630)
[»] scaffold0079 (2 HSPs)
scaffold0079 (1-75)||(4000-4074)
scaffold0079 (256-310)||(4252-4306)
[»] scaffold0057 (3 HSPs)
scaffold0057 (232-310)||(5661-5739)
scaffold0057 (1-75)||(5905-5979)
scaffold0057 (178-236)||(5747-5804)
[»] scaffold1295 (1 HSPs)
scaffold1295 (4-75)||(128-199)
[»] scaffold0122 (2 HSPs)
scaffold0122 (4-75)||(24511-24582)
scaffold0122 (261-310)||(24776-24825)
[»] scaffold0001 (4 HSPs)
scaffold0001 (4-75)||(171769-171840)
scaffold0001 (4-75)||(177472-177543)
scaffold0001 (261-310)||(171527-171576)
scaffold0001 (261-310)||(177230-177279)
[»] scaffold0160 (2 HSPs)
scaffold0160 (232-310)||(3139-3217)
scaffold0160 (4-75)||(3381-3452)
[»] chr7 (7 HSPs)
chr7 (9-75)||(13351974-13352040)
chr7 (1-66)||(18151504-18151569)
chr7 (15-75)||(7292872-7292932)
chr7 (232-307)||(15441966-15442041)
chr7 (260-310)||(7292635-7292685)
chr7 (15-60)||(15978014-15978059)
chr7 (238-310)||(13351731-13351803)
[»] scaffold0396 (1 HSPs)
scaffold0396 (4-67)||(12022-12085)
[»] scaffold0141 (3 HSPs)
scaffold0141 (232-307)||(22326-22401)
scaffold0141 (15-75)||(22564-22624)
scaffold0141 (15-75)||(26819-26879)
[»] scaffold0012 (1 HSPs)
scaffold0012 (4-75)||(253303-253374)
[»] scaffold0009 (2 HSPs)
scaffold0009 (4-75)||(271889-271960)
scaffold0009 (232-310)||(271651-271729)
[»] chr1 (3 HSPs)
chr1 (232-310)||(2421393-2421471)
chr1 (232-307)||(51452289-51452364)
chr1 (15-75)||(51452516-51452576)
[»] scaffold0483 (1 HSPs)
scaffold0483 (4-69)||(1043-1108)
[»] scaffold0109 (1 HSPs)
scaffold0109 (4-69)||(45830-45895)
[»] scaffold0124 (2 HSPs)
scaffold0124 (232-307)||(1984-2059)
scaffold0124 (15-75)||(1761-1821)
[»] scaffold0078 (2 HSPs)
scaffold0078 (260-310)||(37660-37710)
scaffold0078 (15-75)||(37413-37473)
[»] scaffold0317 (1 HSPs)
scaffold0317 (15-60)||(12765-12810)
[»] scaffold0032 (2 HSPs)
scaffold0032 (261-310)||(13871-13920)
scaffold0032 (15-60)||(116329-116374)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 159 - 310
Target Start/End: Original strand, 15005223 - 15005374
Alignment:
Q  159 ttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagagcctcagatcatttttgacgattaggg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15005223 ttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagagcctcggatcatttttgacgattaggg 15005322  T
Q  259 gttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15005323 gttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 15005374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 15005065 - 15005139
Alignment:
Q  1 ttgtgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15005065 ttgtgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 15005139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 15889865 - 15889939
Alignment:
Q  1 ttgtgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  15889865 ttgtgatggaatgcatgattataagttgtggttgtggttgattgttgatgataatctcatttcatgacttgggta 15889939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 22585705 - 22585779
Alignment:
Q  1 ttgtgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||||||  |||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||    
T  22585705 ttgtgatgcaatgcatgattataagttgtggttatagttgattgttgatgataatctcatttcatgacttgggta 22585779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 22590536 - 22590610
Alignment:
Q  1 ttgtgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||||||  |||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||    
T  22590536 ttgtgatgcaatgcatgattataagttgtggttatagttgattgttgatgataatctcatttcatgacttgggta 22590610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 26506798 - 26506720
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| ||||||||||||| | | ||||||| |||||||||||||| |||  ||| ||||||||| |||||||||||||    
T  26506798 gcctcggatcatttttgacaaatgggggtttcaaacattcgattttagggcaaaaatggcgaaaatccgcggccgaaac 26506720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 15893022 - 15892977
Alignment:
Q  265 aacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  15893022 aacattcaattttggggcgaaattggcgaaaacccgcggccgaaac 15892977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 15890037 - 15890097
Alignment:
Q  175 aaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagagcctc 236  Q
    ||||||||  ||||||||| |||| | |||||||||||||||||||||| ||||||||||||    
T  15890037 aaacaatttgataacttatccaaa-tgccacgaaacgagtgagttcgacgtgttagagcctc 15890097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17375078 - 17375143
Alignment:
Q  1 ttgtgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatg 66  Q
    ||||||| ||||  |||||||||| |||||||| | ||||||| ||| |||||||||||| |||||    
T  17375078 ttgtgattgaatacatgattataatttgtggttatggttgattgttgttgataatctcatatcatg 17375143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 25640717 - 25640769
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatc 56  Q
    |||| ||||| ||||||||||||||| ||||| ||||||| ||| ||||||||    
T  25640717 tgatggaatgcatgattataagttgttgttgtggttgattgttgttgataatc 25640769  T

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Target: scaffold0116 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 175 - 310
Target Start/End: Complemental strand, 29854 - 29707
Alignment:
Q  175 aaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag------------cctcagatcatttttgacgattaggggttt 262  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||            |||| ||||| |||||| ||||||||||||    
T  29854 aaacaattccataacttattcaaaatgccacgaaacgagtgagttcgacgtgttagagtcttgggctatgcctcggatcacttttgatgattaggggttt 29755  T
Q  263 taaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    || |||||||||||||| | ||||||||| ||||||||||||||||||    
T  29754 tacacattcgattttggagcgaaattggcaaaaacccgcggccgaaac 29707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 175 - 310
Target Start/End: Complemental strand, 25601787 - 25601640
Alignment:
Q  175 aaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag------------cctcagatcatttttgacgattaggggttt 262  Q
    |||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||            |||||||||| |||||| ||||||||||||    
T  25601787 aaacaattccataacttattcaaaatgccacgaaacgagcgagtttgacgtgttagagtctcgggttatgcctcagatcacttttgatgattaggggttt 25601688  T
Q  263 taaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    || |||||||||||||| | ||||||||||||||||||||||||||||    
T  25601687 tacacattcgattttggagcgaaattggcgaaaacccgcggccgaaac 25601640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 25601957 - 25601893
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgac 68  Q
    |||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||||||||||| ||||||    
T  25601957 tgatggaatgcatgatcataagttgtggttgtggttaattgttgatgataatctcattgcatgac 25601893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 14906842 - 14906917
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 307  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  14906842 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 14906917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 23819932 - 23819857
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 307  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  23819932 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 23819857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 14906619 - 14906679
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||| ||| || ||||||||||||  ||||| | |||||||||||||||| |||||    
T  14906619 atgattatatgttatgattgtagttgattgatgatgttgatctcatttcatgacttgggta 14906679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 23820155 - 23820095
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||| ||| || ||||||||||||  ||||| | |||||||||||||||| |||||    
T  23820155 atgattatatgttatgattgtagttgattgatgatgttgatctcatttcatgacttgggta 23820095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 175 - 310
Target Start/End: Complemental strand, 34395020 - 34394873
Alignment:
Q  175 aaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag------------cctcagatcatttttgacgattaggggttt 262  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||            |||| ||||| |||||| ||||||||||||    
T  34395020 aaacaattccataacttattcaaaatgccacgaaacgagcgagttcgacgtgttagagtctcgggttatgcctcggatcacttttgatgattaggggttt 34394921  T
Q  263 taaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    || |||||| ||||||| | ||||||||||||||||||||||||||||    
T  34394920 tacacattcaattttggagcgaaattggcgaaaacccgcggccgaaac 34394873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 163 - 310
Target Start/End: Complemental strand, 19559300 - 19559142
Alignment:
Q  163 gaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagagcctcag------------atcatttttgac 250  Q
    ||||||||||| ||||||||  |||||||||||||| | || ||||| ||||||||||||| |||||||||||| |            ||||||||||||    
T  19559300 gaaaatcaatttaaacaattttataacttattcaaa-tgccccgaaatgagtgagttcgacgtgttagagcctcgggttatgcctcggatcatttttgac 19559202  T
Q  251 gattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    |||||||| |||||||||||||||||||| | ||||||||| ||||||||||| ||||||    
T  19559201 gattagggtttttaaacattcgattttggagcgaaattggcaaaaacccgcgggcgaaac 19559142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 34196595 - 34196673
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||||    
T  34196595 gcctcggatcacttttgacgattgggggttttaaacattcgattttggagcgaaattggcgaaaacccgcggcagaaac 34196673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 16225559 - 16225633
Alignment:
Q  236 cagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||| |||| | |||||||||||| ||||||||    
T  16225559 cagatcatttttgacgattgggggtttaaaacattcgattttggggcgaaaatagcgaaaacccgcagccgaaac 16225633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 19559459 - 19559393
Alignment:
Q  1 ttgtgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatga 67  Q
    ||||||| ||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||    
T  19559459 ttgtgatggaatgcatgattataagttgtggttgtggtagattgttgatgataatctcatttcatga 19559393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 10488423 - 10488348
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 307  Q
    ||||||||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  10488423 gcctcagatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 10488348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 26679892 - 26679814
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| ||||| |||||| ||||  || |||||||||||||||||| |   |||||||||||||| |||||||||||||    
T  26679892 gcctcggatcacttttgatgattgaggattttaaacattcgatttttgatcgaaattggcgaaaatccgcggccgaaac 26679814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 16328328 - 16328403
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 307  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  16328328 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 16328403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 34395178 - 34395119
Alignment:
Q  16 tgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| |||||||||| |||| ||| ||| ||||||||||||||||| ||||||| |||||    
T  34395178 tgatcataagttgtgattgtggttaattgttgatgataatctcattgcatgacttgggta 34395119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 34177965 - 34178003
Alignment:
Q  175 aaacaattccataacttattcaaaattccacgaaacgag 213  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  34177965 aaacaatttcataacttattcaaaatgccacgaaacgag 34178003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 10488646 - 10488586
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||| ||| || ||||||||||||  ||||| | |||||||||||||||| |||||    
T  10488646 atgattatatgttatgattgtagttgattgatgatgttgatctcatttcatgacttgggta 10488586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 26680116 - 26680056
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||| ||| || |||| ||||||| |||||| | |||||||||||||||| |||||    
T  26680116 atgattatatgttatgattgtggttgattgttgatgttgatctcatttcatgacttgggta 26680056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 49071792 - 49071748
Alignment:
Q  31 gttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||| ||||||| |||||||||||||||||||||| || |||||    
T  49071792 gttgtggttgattgttgatgataatctcatttcatgtcttgggta 49071748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 163 - 310
Target Start/End: Complemental strand, 18969871 - 18969713
Alignment:
Q  163 gaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagagcctc------------agatcatttttgac 250  Q
    ||||||||||| |||||||| ||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||            | ||||||||| ||    
T  18969871 gaaaatcaatttaaacaatttcataacttattcaaa-ttccacaaaacgagcgagttcgacgtgttagagcctcgagttatgcctcatatcatttttaac 18969773  T
Q  251 gattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    |||| ||||||||||  |||||||||||||| ||||||||||||||||||||||||||||    
T  18969772 gattgggggttttaagtattcgattttggggcgaaattggcgaaaacccgcggccgaaac 18969713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 310
Target Start/End: Complemental strand, 39656278 - 39656120
Alignment:
Q  164 aaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttaga------------gcctcagatcatttttgacg 251  Q
    ||||||| || |||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||||            ||||| ||||| ||||||||    
T  39656278 aaaatcattttaaacaatttcataacttattcaaaatgccacgaaacgagcgagttcgacgtgttagaatctcgggttatgcctcggatcacttttgacg 39656179  T
Q  252 attaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||| ||||||||| |||||||||||||| |  |||||||| |||||||||||| |||||    
T  39656178 attgggggttttacacattcgattttggagcaaaattggcaaaaacccgcggcagaaac 39656120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 310
Target Start/End: Complemental strand, 48421500 - 48421353
Alignment:
Q  175 aaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgtta------------gagcctcagatcatttttgacgattaggggttt 262  Q
    |||||||| ||||||||||||||||| ||| |||||||| ||||||||| |||||              ||||| ||||| ||||||||||| |||||||    
T  48421500 aaacaatttcataacttattcaaaatgccatgaaacgagcgagttcgacgtgttattgtctcgggttatgcctctgatcacttttgacgattgggggttt 48421401  T
Q  263 taaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||||||||||||||| | |||||||||||||| || ||||||||||    
T  48421400 taaacattcgattttggagcgaaattggcgaaaatccacggccgaaac 48421353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 22274900 - 22274822
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| ||||| |||||| |||||||||||||| ||||| |||||||| | |||||||||||||| |||||||||||||    
T  22274900 gcctcggatcacttttgatgattaggggttttacacatttgattttggagcgaaattggcgaaaatccgcggccgaaac 22274822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 18970003 - 18969943
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| |||||    
T  18970003 atgattataagttgtggttgtggttgattgttgatgataacctcatttcatgacttgggta 18969943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 13838829 - 13838758
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||| ||||||| |||||    
T  13838829 tgatggaatgaatgatcataagttgtggttgtggttaattgttgatgataatctcattgcatgacttgggta 13838758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 39656425 - 39656371
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgact 69  Q
    ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  39656425 atgattataagttgtggttgtggttaattgttgatgataatctcatttcatgact 39656371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 15468671 - 15468742
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||||||||||| ||||||| |||||    
T  15468671 tgatggaatgtatgatcataagttgtggttgtggttaattgttgatgataatctcattacatgacttgggta 15468742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 22275134 - 22275063
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||||||||||| ||||||| |||||    
T  22275134 tgatggaatgcatgatcataagttgtggttgtggttaattgttgatgataatctcattacatgacttgggta 22275063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 48421670 - 48421599
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| |||||||||| |||||||||| ||| ||| ||||||||||| ||||||||||||| |||||    
T  48421670 tgatggaatgcatgattataaattgtggttgtggttaattgttgatgataatatcatttcatgacttgggta 48421599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 13838566 - 13838516
Alignment:
Q  261 tttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaact 311  Q
    ||||||||||||||||| ||  |||||||| ||||||||||||||||||||    
T  13838566 tttaaacattcgatttttggtcgaaattggtgaaaacccgcggccgaaact 13838516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 16744686 - 16744763
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaa 309  Q
    ||||| ||||| |||||| ||||  || |||||||||||||||||| |   |||||||||||||||| ||||||||||    
T  16744686 gcctcggatcacttttgatgattgaggattttaaacattcgatttttgatcgaaattggcgaaaacctgcggccgaaa 16744763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 2449629 - 2449704
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 307  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  2449629 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 2449704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 2449417 - 2449477
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||| ||| || ||||||||||||  ||||| | |||||||||||||||| |||||    
T  2449417 atgattatatgttatgattgtagttgattgatgatgttgatctcatttcatgacttgggta 2449477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 310
Target Start/End: Complemental strand, 4719 - 4562
Alignment:
Q  164 aaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagagcctcag------------atcatttttgacg 251  Q
    |||||||||| |||||||| |||||||||||||||||  || |||||||| ||||||||| |||||||||||| |            |||||||||||||    
T  4719 aaaatcaatttaaacaatttcataacttattcaaaatgtcatgaaacgagcgagttcgacgtgttagagcctcgggttatgcatcggatcatttttgacg 4620  T
Q  252 attaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  4619 att-ggggttttaaacattcgattttggagcgaaattggcgaaaactcgcggccgaaac 4562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 4877 - 4806
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| ||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||| |||||    
T  4877 tgatggaatgcatgattataagttgtggttgtggttaattgttgatgataatctcattgcatgacttgggta 4806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1734 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold1734
Description:

Target: scaffold1734; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 175 - 310
Target Start/End: Complemental strand, 1162 - 1015
Alignment:
Q  175 aaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttaga------------gcctcagatcatttttgacgattaggggttt 262  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||            ||| | ||||| |||||| ||||||||||||    
T  1162 aaacaattccataacttattcaaaatgccacgaaacgagcgagttcgacgtgttagaatctcgggttatgccacggatcagttttgatgattaggggttt 1063  T
Q  263 taaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    || |||||||||||||| | ||||||||||||||||||| ||||||||    
T  1062 tacacattcgattttggagcgaaattggcgaaaacccgcagccgaaac 1015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1734; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 1332 - 1261
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||||||||||| ||||||| |||||    
T  1332 tgatggaatgcatgatcataagttgtggttgtggttaattgttgatgataatctcattgcatgacttgggta 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 175 - 310
Target Start/End: Original strand, 4147 - 4292
Alignment:
Q  175 aaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag------------cctcagatcatttttgacgattaggggttt 262  Q
    |||||||| ||||||||||||||| | |||||||||||| ||||||||| ||||||||            |||||||||| ||||||||||| |||||||    
T  4147 aaacaatttcataacttattcaaa-tgccacgaaacgagcgagttcgacgtgttagagtctcgggttatgcctcagatcacttttgacgattgggggttt 4245  T
Q  263 taaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    | ||||||||||||||| |||||||||||||||| |||||||||||||    
T  4246 tcaacattcgattttggagtgaaattggcgaaaa-ccgcggccgaaac 4292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 1663 - 1734
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| |||||||||||||||||||||  || ||| || |||||||||||||||||||||| |||||    
T  1663 tgatggaatgcatgattataagttgtggttgtgattaattgttaatgataatctcatttcatgacttgggta 1734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 175 - 310
Target Start/End: Original strand, 22368 - 22515
Alignment:
Q  175 aaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag------------cctcagatcatttttgacgattaggggttt 262  Q
    |||| ||| ||||||||||||||||| ||| |||||||| ||||||||| ||||||||            ||||| | |||||||||||||| |||||||    
T  22368 aaacgatttcataacttattcaaaatgccaagaaacgagcgagttcgacgtgttagagtctcgggttatgcctcataccatttttgacgattgggggttt 22467  T
Q  263 taaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  22468 taaacattcgattttggagcgaaattggcgaaaacccgcggccaaaac 22515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 25004671 - 25004593
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  25004671 gcctcggatcacttttgacgattgggggttttaaacattcgattttggagcgaaattggcgaaaacccgcggccgaaac 25004593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 2031743 - 2031672
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||||||||||| ||||||| |||||    
T  2031743 tgatggaatgcatgatcataagttgtggttgtggttaattgttgatgataatctcattgcatgacttgggta 2031672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 17471910 - 17471981
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||||||||||| ||||||| |||||    
T  17471910 tgatggaatgcatgatcataagttgtggttgtggttaattgttgatgataatctcattacatgacttgggta 17471981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 17472145 - 17472223
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| ||||| |||||| ||||  ||  ||||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  17472145 gcctcggatcacttttgatgattgaggactttaaacattcgatttttggtcgaaattggcgaaaacccgcggccgaaac 17472223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 2031508 - 2031430
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| ||||| |||||| ||||  ||  ||||||||||||||||| ||  |||||||||||||||||||||| |||||    
T  2031508 gcctcggatcacttttgatgattgaggactttaaacattcgatttttggtcgaaattggcgaaaacccgcggctgaaac 2031430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 25004903 - 25004838
Alignment:
Q  10 aatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||||||||||||||||||| ||| ||| ||||||||||||  ||||||| ||| |||||    
T  25004903 aatgcatgattataagttgtggttgtggttaattgttgatgataatcggatttcataacttgggta 25004838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 25900808 - 25900883
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 307  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  25900808 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 25900883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 4200383 - 4200461
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| ||||| |||||| ||||  ||  |||||| |||||||||| ||   |||||||||||||||||||||||||||    
T  4200383 gcctcggatcacttttgatgattgaggactttaaatattcgatttttggtcaaaattggcgaaaacccgcggccgaaac 4200461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 21233930 - 21234008
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| ||||| |||||| ||||  || |||||||||||||||||| |   |||||||||||||| ||||||| |||||    
T  21233930 gcctcggatcacttttgatgattgaggattttaaacattcgatttttgatcgaaattggcgaaaatccgcggctgaaac 21234008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 25900584 - 25900644
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||| ||| || ||||||||||||  ||||| | |||||||||||||||| |||||    
T  25900584 atgattatatgttatgattgtagttgattgatgatgttgatctcatttcatgacttgggta 25900644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 310
Target Start/End: Original strand, 44432 - 44590
Alignment:
Q  163 gaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagagcct------------cagatcatttttgac 250  Q
    ||||||||||| ||||||||  |||||||||||||| | |||| ||||||||||||||||  |||||||||||            |||||||||||| |     
T  44432 gaaaatcaatttaaacaattttataacttattcaaa-tgccacaaaacgagtgagttcgatgtgttagagcctcgggttatgcctcagatcattttttat 44530  T
Q  251 gattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    |||| ||||||||||||||||||||||| || ||||||||||||||| ||||| ||||||    
T  44531 gattgggggttttaaacattcgattttgaggcgaaattggcgaaaacacgcggacgaaac 44590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 44273 - 44347
Alignment:
Q  1 ttgtgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||| | ||| ||||||| ||||||||||||  ||||||||||||||||||||| ||||||||||| |||||    
T  44273 ttgtgatgggatgcatgattacaagttgtggttgaggttgattattgatgataatcttatttcatgacttgggta 44347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 310
Target Start/End: Complemental strand, 23217814 - 23217656
Alignment:
Q  163 gaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagagcctcag------------atcatttttgac 250  Q
    ||||| ||||| |||||||| ||||||||||||||| | || ||||||||||||||||||| |||||||||||| |            |||||| || ||    
T  23217814 gaaaaacaatttaaacaatttcataacttattcaaa-tgccgcgaaacgagtgagttcgacgtgttagagcctcgggttattcctcggatcattcttaac 23217716  T
Q  251 gattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||  ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||    
T  23217715 gattgagggttttaaacattcgattttggggcgaaattggcaaaaacctgcggccgaaac 23217656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 23217972 - 23217899
Alignment:
Q  2 tgtgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||||| ||||| ||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| |||||    
T  23217972 tgtgatggaatgcatgattataagttgtagttgtggttgattgttgatgataatctcatttcatgacttgggta 23217899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 22321605 - 22321673
Alignment:
Q  1 ttgtgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgact 69  Q
    ||||||| ||||| ||||||||| |||||| |||| ||||||| |||||||||||||||||||||||||    
T  22321605 ttgtgatggaatgcatgattatatgttgtgattgtggttgattgttgatgataatctcatttcatgact 22321673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 308
Target Start/End: Original strand, 22321764 - 22321921
Alignment:
Q  163 gaaaatcaattcaaa-caattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagagcctcag------------atcatttttga 249  Q
    ||||||||||||||| ||||| |||||||||| |||| | |||||||||||| ||||| ||| |||||||||||| |            |||| ||||||    
T  22321764 gaaaatcaattcaaatcaatttcataacttatacaaa-tgccacgaaacgagcgagtttgacgtgttagagcctcgggttatacctcggatcacttttga 22321862  T
Q  250 cgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaa 308  Q
     |||| ||| |||||||||||||||| | ||  ||||||||||||||||||||||||||    
T  22321863 tgattggggattttaaacattcgattcttggtcgaaattggcgaaaacccgcggccgaa 22321921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 41507131 - 41507202
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||||||||||| ||||||| |||||    
T  41507131 tgatggaatgcatgatcataagttgtggttgtggttaattgttgatgataatctcattgcatgacttgggta 41507202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 2544656 - 2544578
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| ||||| |||||| ||||  ||  ||||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  2544656 gcctcggatcacttttgatgattgaggactttaaacattcgatttttggtcgaaattggcgaaaacccgcggccgaaac 2544578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 24929119 - 24929190
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| ||||| ||||||| ||||||| ||| ||| ||||||||||||||||| ||||||| |||||    
T  24929119 tgatggaatgcatgatcataagttctggttgtggttaattgttgatgataatctcattgcatgacttgggta 24929190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 5237948 - 5237873
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 307  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  5237948 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 5237873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 24661650 - 24661725
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 307  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  24661650 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 24661725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 43685407 - 43685332
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 307  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  43685407 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 43685332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 22907785 - 22907863
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| ||||| |||||| ||||  || |||||||||||| |||||     ||||||||||||||||||||||||||||    
T  22907785 gcctcggatcacttttgatgattgaggattttaaacattctattttttatcgaaattggcgaaaacccgcggccgaaac 22907863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 21259650 - 21259702
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatc 56  Q
    |||| ||||| ||||||||||||||| ||||| ||||||| ||| ||||||||    
T  21259650 tgatggaatgcatgattataagttgttgttgtggttgatttttgttgataatc 21259702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 22907561 - 22907621
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||| ||| || |||| ||||||| |||||| | |||||||||||||||| |||||    
T  22907561 atgattatatgttatgattgtggttgattgttgatgttgatctcatttcatgacttgggta 22907621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 22981284 - 22981232
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatc 56  Q
    |||| ||||| ||||||||||||||| ||||| ||||||| ||| ||||||||    
T  22981284 tgatggaatgcatgattataagttgttgttgtggttgattgttgttgataatc 22981232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 43685630 - 43685570
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||| ||| || |||| ||||||| |||||| | |||||||||||||||| |||||    
T  43685630 atgattatatgttatgattgtggttgattgttgatgttgatctcatttcatgacttgggta 43685570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4000 - 4074
Alignment:
Q  1 ttgtgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||| ||||| || ||||||||||||||||||  |||||| ||||||||||||||||||||||||| |||||    
T  4000 ttgtgatggaatgcataattataagttgtggttgtgcttgattgttgatgataatctcatttcatgacttgggta 4074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 4252 - 4306
Alignment:
Q  256 ggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  4252 ggggttttaaacattcgattttggggggaaattggcaaaaacccgcggccgaaac 4306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 5739 - 5661
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| |||||||||||| || | |||||||||||||||||||||||| | |||| ||||||||||||| |||||||||    
T  5739 gcctcggatcatttttgatgaatgggggttttaaacattcgattttggagcgaaaatggcgaaaacccgtggccgaaac 5661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 5979 - 5905
Alignment:
Q  1 ttgtgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||| ||||| |||||| |||||||||||||| ||||||| ||| | |||||||||| ||||| || |||||    
T  5979 ttgtgatcgaatgcatgattgtaagttgtggttgtggttgattgttgttaataatctcatatcatggcttgggta 5905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 5804 - 5747
Alignment:
Q  178 caattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagagcctc 236  Q
    ||||| || |||||||||||| | || ||||||||||||||||||| ||||||||||||    
T  5804 caatttcaaaacttattcaaa-tgccgcgaaacgagtgagttcgacgtgttagagcctc 5747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1295 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1295
Description:

Target: scaffold1295; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 199 - 128
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| |||||||||||||||||||||  || ||| || |||||||||||||||||||||| |||||    
T  199 tgatggaatgcatgattataagttgtggttgtgattaattgttaatgataatctcatttcatgacttgggta 128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 24511 - 24582
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||||||||||| ||||||| |||||    
T  24511 tgatggaatgcatgatcataagttgtggttgtggttaattgttgatgataatctcattgcatgacttgggta 24582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 24776 - 24825
Alignment:
Q  261 tttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    |||||||||| |||||| ||  ||||||||||||||||||||||||||||    
T  24776 tttaaacatttgatttttggtcgaaattggcgaaaacccgcggccgaaac 24825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 171840 - 171769
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||||||||||| ||||||| |||||    
T  171840 tgatggaatgcatgatcataagttgtggttgtggttaattgttgatgataatctcattgcatgacttgggta 171769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 177543 - 177472
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||||||||||| ||||||| |||||    
T  177543 tgatggaatgcatgatcataagttgtggttgtggttaattgttgatgataatctcattgcatgacttgggta 177472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 171576 - 171527
Alignment:
Q  261 tttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||||||||||||| | ||  |||||||||||||||||| |||||||||    
T  171576 tttaaacattcgattcttggtcgaaattggcgaaaacccggggccgaaac 171527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 177279 - 177230
Alignment:
Q  261 tttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||||||||||||| | ||  |||||||||||||||||| |||||||||    
T  177279 tttaaacattcgattcttggtcgaaattggcgaaaacccggggccgaaac 177230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 3217 - 3139
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| ||||| |||||| |||| |||  |||||||||||||||||  |  ||||||||||||||||||||||||||||    
T  3217 gcctcggatcacttttgatgattggggactttaaacattcgattttttgtcgaaattggcgaaaacccgcggccgaaac 3139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 3452 - 3381
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||| ||||||| ||||||| |||||    
T  3452 tgatggaatgcatgatcataagttgtggttgtggttaattgttgatgatagtctcattgcatgacttgggta 3381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 13352040 - 13351974
Alignment:
Q  9 gaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||| ||||||||||||||||||||| || |||| |||||||||||||| |||||| ||| |||||    
T  13352040 gaatgcatgattataagttgtggttgtggtagattgttgatgataatctcgtttcattacttgggta 13351974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 18151504 - 18151569
Alignment:
Q  1 ttgtgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatg 66  Q
    ||||||| ||||  ||||||||||||||||||||| ||||||| ||| |||||||||||| |||||    
T  18151504 ttgtgattgaatacatgattataagttgtggttgtggttgattgttgttgataatctcatatcatg 18151569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 7292932 - 7292872
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||| |||||| |||| ||||||| |||||| | |||||||||||||||| |||||    
T  7292932 atgattatatgttgtgattgtggttgattgttgatgttgatctcatttcatgacttgggta 7292872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 15441966 - 15442041
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 307  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  15441966 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 15442041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 7292685 - 7292635
Alignment:
Q  260 ttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    |||||||||||||||||| |    |||||||||||||||||||||||||||    
T  7292685 ttttaaacattcgatttttgatcaaaattggcgaaaacccgcggccgaaac 7292635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 15978014 - 15978059
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcat 60  Q
    ||||||||||||||||||||| ||| ||| ||| ||||||||||||    
T  15978014 atgattataagttgtggttgttgttaattgttgttgataatctcat 15978059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 13351803 - 13351731
Alignment:
Q  238 gatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    |||||||||||| || ||||||   |||  |||||||||||| | |||| ||||||||||||| |||||||||    
T  13351803 gatcatttttgatgaataggggacctaactattcgattttggagcgaaaatggcgaaaacccgtggccgaaac 13351731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 12022 - 12085
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatga 67  Q
    |||| ||||| |||||||||||||||||||||  || ||| ||||||||||||||||| |||||    
T  12022 tgatggaatgcatgattataagttgtggttgtgtttaattgttgatgataatctcattgcatga 12085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 22401 - 22326
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 307  Q
    ||||||||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  22401 gcctcagatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 22326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 22624 - 22564
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||| ||| || ||||||||||||  ||||| | |||||||||||||||| |||||    
T  22624 atgattatatgttatgattgtagttgattgatgatgttgatctcatttcatgacttgggta 22564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 26879 - 26819
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||| ||| || ||||||||||||  ||||| | |||||||||||||||| |||||    
T  26879 atgattatatgttatgattgtagttgattgatgatgttgatctcatttcatgacttgggta 26819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 253303 - 253374
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| ||||||||||||||||| | | ||| ||| ||||||||||||||||| ||||||| |||||    
T  253303 tgatggaatgcatgattataagttgtgggtttggttaattgttgatgataatctcattgcatgacttgggta 253374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 271960 - 271889
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    |||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||||||||||| ||| ||| |||||    
T  271960 tgatggaatgcatgatcataagttgtggttgtggttaattgttgatgataatctcattgcataacttgggta 271889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 271729 - 271651
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| ||||| |||||| ||||  ||  ||||||||||||||||| ||  ||||||||| ||||||||||||||||||    
T  271729 gcctcggatcacttttgatgattgaggactttaaacattcgatttttggtcgaaattggcaaaaacccgcggccgaaac 271651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 2421393 - 2421471
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||| ||||| |||||| |||| ||   ||||| ||||||||||| ||  ||||||||||||||||||||||||||||    
T  2421393 gcctcggatcacttttgatgattgggaactttaaccattcgatttttggtcgaaattggcgaaaacccgcggccgaaac 2421471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 51452364 - 51452289
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 307  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  51452364 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 51452289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 51452576 - 51452516
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||| ||| || ||||||||||||  ||||| | |||||||||||||||| |||||    
T  51452576 atgattatatgttatgattgtagttgattgatgatgttgatctcatttcatgacttgggta 51452516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 1043 - 1108
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgact 69  Q
    |||| ||||| ||||||||||||||||||||| ||| ||| ||||||||| | ||||| |||||||    
T  1043 tgatggaatgcatgattataagttgtggttgtggttaattgttgatgatagtatcattgcatgact 1108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 45830 - 45895
Alignment:
Q  4 tgatagaatgaatgattataagttgtggttgtagttgattattgatgataatctcatttcatgact 69  Q
    |||| ||||| ||||||||||||||||||||| ||| ||| ||||||||| | ||||| |||||||    
T  45830 tgatggaatgcatgattataagttgtggttgtggttaattgttgatgatagtatcattgcatgact 45895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 1984 - 2059
Alignment:
Q  232 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 307  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  1984 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 2059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 1761 - 1821
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||| ||| || ||||||||||||  ||||| | |||||||||||||||| |||||    
T  1761 atgattatatgttatgattgtagttgattgatgatgttgatctcatttcatgacttgggta 1821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 37660 - 37710
Alignment:
Q  260 ttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    |||||||||||||||||| |   ||||||||| ||||||||||||||||||    
T  37660 ttttaaacattcgatttttgatcgaaattggcaaaaacccgcggccgaaac 37710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 37413 - 37473
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcatttcatgactcgggta 75  Q
    ||||||||| |||||| |||| ||||||| || ||| | |||||||||||||||| |||||    
T  37413 atgattatatgttgtgattgtggttgattgttaatgttgatctcatttcatgacttgggta 37473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 12765 - 12810
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcat 60  Q
    ||||||||||||||||||||| ||| ||| ||| ||||||||||||    
T  12765 atgattataagttgtggttgttgttaattgttgttgataatctcat 12810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 13871 - 13920
Alignment:
Q  261 tttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 310  Q
    ||||||||||||||||| ||  ||||||||||||||| |||||| |||||    
T  13871 tttaaacattcgatttttggtcgaaattggcgaaaactcgcggcagaaac 13920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 116329 - 116374
Alignment:
Q  15 atgattataagttgtggttgtagttgattattgatgataatctcat 60  Q
    ||||||||||||||||||||| ||| ||| ||| ||||||||||||    
T  116329 atgattataagttgtggttgttgttaattgttgttgataatctcat 116374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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