View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10392_low_21 (Length: 302)
Name: NF10392_low_21
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 5391648 - 5391920
Alignment:
| Q |
17 |
aaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgatcagagacatcgcattgaatgtagtgaacatacttatcagcgttcc |
116 |
Q |
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| T |
5391648 |
aaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgatcagagacatcgcattgaatgtagtcaacataattatcagtgttcc |
5391747 |
T |
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| Q |
117 |
acgtt-ggttgtggacggcgagccacgccataaaccttccatggaccacctggtgtgtcgtcgagaggtaaaatctctgctaggctatttcccacaattc |
215 |
Q |
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| T |
5391748 |
acgtttggttgtggacggcgagccacgccataaaccttccatggaccacctggtgtgtcgtcgagaggtaaaatctctgctaggctatttcccacaattc |
5391847 |
T |
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| Q |
216 |
ccgtcacgcctataattaatgctacattttggaagcttcgtggtgattccttgaattctgtaatctgcacagg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391848 |
ccgtcacgcctataattaatgctacattttggaagcttcgtggtgattccttgaattctgtaatctgcacagg |
5391920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 5395459 - 5395730
Alignment:
| Q |
17 |
aaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgatcagagacatcgcattgaatgtagtgaacatacttatcagcgttcc |
116 |
Q |
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| T |
5395459 |
aaaatatgtgtcacatcagttaagggagagagcttcaattcgacgtctttttggtcagagacatcgcattgaatgtagtgaacatacttatcagcgttcc |
5395558 |
T |
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| Q |
117 |
acgttggttgtggacggcgagccacgccataaaccttccatggaccacctggtgtgtcgtcgagaggtaaaatctctgctaggctatttcccacaattcc |
216 |
Q |
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| T |
5395559 |
acgttggttgtggacggcgagccacaccataaaccttccatggaccacctggtgtgtcgtcgagaggtagaatctctgctaggctatttcccacaattcc |
5395658 |
T |
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| Q |
217 |
cgtcacgcctataattaatgctacattttggaagcttcgtggtgattccttgaattctgtaatctgcacagg |
288 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
5395659 |
cgtcacgcctataatcaatgctacattttggaagcttcctggtgcttccttgaattctgtaatctgcacagg |
5395730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 5401609 - 5401871
Alignment:
| Q |
20 |
atatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgatcagagacatcgcattgaatgtagtgaacatacttatcagcgttccacg |
119 |
Q |
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||||| ||||| || ||||| || || |||||||||||||| || ||||||| |||||||| || ||||| ||||||||| |||||| | |||||| |
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| T |
5401609 |
atatgggtcacgtctgttaaaggggatagcttcaattcaacatcgttttgattggagacatcacactgaatatagtgaacagggttatcaacattccaca |
5401708 |
T |
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| Q |
120 |
ttggttgtggacggcgagccacgccataaaccttccatggaccacctggtgtgtcgtcgagaggtaaaatctctgctaggctatttcccacaattcccgt |
219 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| | ||||||| ||||||||||| ||||||||||||||||| || |
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| T |
5401709 |
ttggtcgtggacggcgagccacgccataaaccttccatggtccaactggtgtgtcttttagaggtaggatctctgctagactatttcccacaattcctgt |
5401808 |
T |
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| Q |
220 |
cacgcctataattaatgctacattttggaagcttcgtggtgattccttgaattctgtaatctg |
282 |
Q |
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||||||||||| |||||||||||||||| | ||||||||| ||||||||||| ||| ||||| |
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| T |
5401809 |
tacgcctataatcaatgctacattttggacgtttcgtggtgcttccttgaattttgtgatctg |
5401871 |
T |
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