View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10392_low_24 (Length: 259)

Name: NF10392_low_24
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10392_low_24
NF10392_low_24
[»] chr8 (9 HSPs)
chr8 (1-258)||(1350485-1350742)
chr8 (91-217)||(1361149-1361275)
chr8 (131-205)||(1344085-1344159)
chr8 (131-205)||(1355428-1355502)
chr8 (5-46)||(1344031-1344072)
chr8 (5-46)||(1355515-1355556)
chr8 (75-119)||(1344023-1344067)
chr8 (75-119)||(1355520-1355564)
chr8 (161-237)||(1365043-1365119)
[»] chr3 (2 HSPs)
chr3 (131-237)||(24618473-24618579)
chr3 (75-119)||(24618411-24618455)
[»] chr2 (1 HSPs)
chr2 (137-192)||(43364441-43364496)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 1350485 - 1350742
Alignment:
Q  1 agaggatcatgtggttgagtttgatgataagattgatcaggccttaacggcaaaaattgacaagcaagtggagaaagaagatgatcctagggttgagttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350485 agaggatcatgtggttgagtttgatgataagattgatcaggccttaacggcaaaaattgacaagcaagtggagaaagaagatgatcctagggttgagttt 1350584  T
Q  101 gatgatgagattgatcaggacccgatgaccgacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactctta 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350585 gatgatgagattgatcaggacccaatgaccgacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactctta 1350684  T
Q  201 gagatcgtgacaatcaccaggatatcgttgcatagttgttgatgttgttatatgtttt 258  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1350685 gagatcgtgacaatcaccgggatatcgttgcatagttgttgatgttgttatatgtttt 1350742  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 217
Target Start/End: Original strand, 1361149 - 1361275
Alignment:
Q  91 ggttgagtttgatgatgagattgatcaggacccgatgaccgacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaa 190  Q
    ||||||||||||||||||||||||||| |||   ||||| |||| ||||||||||||||||||||||||||||||||| |||   |||||||||||||||    
T  1361149 ggttgagtttgatgatgagattgatcatgacttaatgactgacaaagaagtggaagaatttgcgcgcagattaaattgtactcgcgaagagagaataaaa 1361248  T
Q  191 gaaactcttagagatcgtgacaatcac 217  Q
    |||| |||||||||| |||||||||||    
T  1361249 gaaattcttagagattgtgacaatcac 1361275  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 1344085 - 1344159
Alignment:
Q  131 gacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactcttagagat 205  Q
    ||||| ||||| ||||||||||| ||||||||||||||  ||| ||||||||||| |||||||| ||||||||||    
T  1344085 gacagggaagtcgaagaatttgcacgcagattaaattgttcttgggaagagagaaaaaaagaaattcttagagat 1344159  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 1355502 - 1355428
Alignment:
Q  131 gacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactcttagagat 205  Q
    ||||| ||||| ||||||||||| ||||||||||||||  ||| ||||||||||| |||||||| ||||||||||    
T  1355502 gacagggaagtcgaagaatttgcacgcagattaaattgttcttgggaagagagaaaaaaagaaattcttagagat 1355428  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 1344031 - 1344072
Alignment:
Q  5 gatcatgtggttgagtttgatgataagattgatcaggcctta 46  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  1344031 gatcttgtggttgagtttgatgatgagattgatcaggcctta 1344072  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 1355556 - 1355515
Alignment:
Q  5 gatcatgtggttgagtttgatgataagattgatcaggcctta 46  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  1355556 gatcttgtggttgagtttgatgatgagattgatcaggcctta 1355515  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 1344023 - 1344067
Alignment:
Q  75 aagaagatgatcctagggttgagtttgatgatgagattgatcagg 119  Q
    |||||||||||| |  |||||||||||||||||||||||||||||    
T  1344023 aagaagatgatcttgtggttgagtttgatgatgagattgatcagg 1344067  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 1355564 - 1355520
Alignment:
Q  75 aagaagatgatcctagggttgagtttgatgatgagattgatcagg 119  Q
    |||||||||||| |  |||||||||||||||||||||||||||||    
T  1355564 aagaagatgatcttgtggttgagtttgatgatgagattgatcagg 1355520  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 1365043 - 1365119
Alignment:
Q  161 ttaaattgcactttggaagagagaataaaagaaactcttagagatcgtgacaatcaccaggatatcgttgcatagtt 237  Q
    ||||||||  |||||||||||||||||||||||| | ||| | ||  || ||||||| |||| || |||||||||||    
T  1365043 ttaaattgttctttggaagagagaataaaagaaattattacatatgttggcaatcacaaggaaattgttgcatagtt 1365119  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 237
Target Start/End: Original strand, 24618473 - 24618579
Alignment:
Q  131 gacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactcttagagatcgtgacaatcaccaggatatcgttg 230  Q
    ||||| ||||||||||||||||| ||||||||||| ||  ||| ||||||||| | || ||||| |||||||| |  || ||||||| |||| ||  |||    
T  24618473 gacagggaagtggaagaatttgcacgcagattaaactgtgcttgggaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattg 24618572  T
Q  231 catagtt 237  Q
    |||||||    
T  24618573 catagtt 24618579  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 24618411 - 24618455
Alignment:
Q  75 aagaagatgatcctagggttgagtttgatgatgagattgatcagg 119  Q
    ||||||||||||||  |||||||||| ||||||||||||||||||    
T  24618411 aagaagatgatcctgtggttgagtttaatgatgagattgatcagg 24618455  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 43364496 - 43364441
Alignment:
Q  137 gaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaaga 192  Q
    ||||||||||||||||| ||||||||||||||  | ||| ||||||||||| ||||    
T  43364496 gaagtggaagaatttgcccgcagattaaattgttccttgcaagagagaatacaaga 43364441  T

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