View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10392_low_25 (Length: 252)
Name: NF10392_low_25
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_25 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 30343259 - 30343023
Alignment:
| Q |
1 |
ctggctgcaattgatcttgatgaactcacctctcaaattttctcattgatgccaatagatgaactgataggtaaaactgctgaacagattgcttttgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343259 |
ctggctgcaattgatcttgatgaactcacctctcaaattttctcattgatgccaatagatgaactgataggtaaaactgctgaacagattgcttttgaag |
30343160 |
T |
|
| Q |
101 |
gcatagcttctgctataatacaaggtagaaacaaagaaggagcaagttcaagcgctgcacggatagtttcggcattgaaagacatggcgaatgcaatgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343159 |
gcatagcttctgctataatacaaggtagaaacaaagaaggagcaagttcaagcgctgcacggatagtttcggcattgaaagacatggcgaatgcaatgag |
30343060 |
T |
|
| Q |
201 |
tttaggaagacaggaacggatttcgacaggaatttgg |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343059 |
tttaggaagacaggaacggatttcgacaggaatttgg |
30343023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 45029407 - 45029580
Alignment:
| Q |
10 |
attgatcttgatgaactcacctctcaaatttt---ctcattgatgccaatagatgaactgataggtaaaactgctgaacagattgcttttgaaggcatag |
106 |
Q |
| |
|
|||| |||||||||||| || ||||||||| ||| |||||||| ||||||||| |||| || |||||||| || |||||||||||||||||||| | |
|
|
| T |
45029407 |
attggtcttgatgaacttggctgtcaaattttatcctccttgatgccgatagatgaattgatcggaaaaactgcagagcagattgcttttgaaggcatcg |
45029506 |
T |
|
| Q |
107 |
cttctgctataatacaaggtagaaacaaagaaggagcaagttcaagcgctgcacggatagtttcggcattgaaa |
180 |
Q |
| |
|
| || || | ||||||||||| ||||| |||||||||||||| |||||||| || |||||||| ||||||||| |
|
|
| T |
45029507 |
cgtcagccgtcatacaaggtaggaacaaggaaggagcaagttccagcgctgcccgcatagtttctgcattgaaa |
45029580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University