View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10392_low_27 (Length: 250)
Name: NF10392_low_27
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 7503164 - 7503394
Alignment:
| Q |
2 |
tactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtcctttta-tcaagaatgata |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||| | || |||||||| | |||||||||||| |
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| T |
7503164 |
tactatcatatcaagacttgatttttagctg----ttgacacttgttttttcatgtcttt--cttaggctgttgagatgtcctttgaatcaagaatgata |
7503257 |
T |
|
| Q |
101 |
gaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaatttctcctatttgttttataattataaagaatttta |
200 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7503258 |
gaaggattataactactcaagtcaaagcccctacacaagcataataagtgtaagttctcttaaatttctcctatttgttttataattataaagaatttta |
7503357 |
T |
|
| Q |
201 |
tgttgttttttatcatccataataatctactatgttc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
7503358 |
tgttgttttttatcatccataataatctactatgttc |
7503394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 7719832 - 7719601
Alignment:
| Q |
2 |
tactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtccttt-tatcaagaatgata |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| | || |||||||| ||||||||||||| |
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|
| T |
7719832 |
tactatcatatcaagacttgattt----ttagcttttgacacttgttttttcatgtc--tttcttaggctgttgagatgtcctttgaatcaagaatgata |
7719739 |
T |
|
| Q |
101 |
gaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaatttctcctatttgtttta-taattataaagaatttt |
199 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
7719738 |
gaaggattataactactcaagtcaaagcccctacacaagcataataagtgtcagatctcttaaatttctcctatttgttttattaattataaagaatttt |
7719639 |
T |
|
| Q |
200 |
atgttgttttttatcatccataataatctactatgttc |
237 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
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|
| T |
7719638 |
atgttgttgtttatcatccataataatctactatgttc |
7719601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 7530721 - 7530926
Alignment:
| Q |
31 |
tagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtccttttatcaagaatgatagaaggatcgtaactactctagtcaaagccc |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||| ||||||||| ||||||||||| |
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|
| T |
7530721 |
tagcttttgacacttgttttgtcatgtcttt--cttaggctgctgagttgtccttttttcaatgatgatagaaggattataactactcaagtcaaagccc |
7530818 |
T |
|
| Q |
131 |
ctacacaagcataataagtgtaagttttcttaaatttctcctatttgttttataattataaagaat--tttatgttgttttttatcatccataataatct |
228 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||||||||| | |
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|
| T |
7530819 |
ctacacaagcataataagtgtaagttctcttaaatttctcatatttgttttataattataaattattatttatgttgtttttcatcatccataataattt |
7530918 |
T |
|
| Q |
229 |
actatgtt |
236 |
Q |
| |
|
|||||||| |
|
|
| T |
7530919 |
actatgtt |
7530926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 7497006 - 7497211
Alignment:
| Q |
31 |
tagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtccttttatcaagaatgatagaaggatcgtaactactctagtcaaagccc |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |||| ||||||||||||| ||||||||| ||||||||||| |
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|
| T |
7497006 |
tagcttttgacacttgttttgtcatgtcttt--cttaggatgctgagttgtccttttttcaatgatgatagaaggattataactactcaagtcaaagccc |
7497103 |
T |
|
| Q |
131 |
ctacacaagcataataagtgtaagttttcttaaatttctcctatttgttttataattataaagaat--tttatgttgttttttatcatccataataatct |
228 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||| || ||||||||||||||| | |
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|
| T |
7497104 |
ctacacaagaataataagtgtaagttctcttaaatttctcatatttgttttataattataaagtattatttatgttgttgttcatcatccataataatat |
7497203 |
T |
|
| Q |
229 |
actatgtt |
236 |
Q |
| |
|
|||||||| |
|
|
| T |
7497204 |
actatgtt |
7497211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 7522664 - 7522869
Alignment:
| Q |
31 |
tagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtccttttatcaagaatgatagaaggatcgtaactactctagtcaaagccc |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||| ||||||||| ||||||||||| |
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|
| T |
7522664 |
tagcttttgacacttgttttgtcatgtcttt--cttaggctgctgagttgtccttttttcaatgatgatagaaggattataactactcaagtcaaagccc |
7522761 |
T |
|
| Q |
131 |
ctacacaagcataataagtgtaagttttcttaaatttctcctatttgttttataattataaagaat--tttatgttgttttttatcatccataataatct |
228 |
Q |
| |
|
|||| |||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||| || ||||||||||||||| | |
|
|
| T |
7522762 |
ctacgcaagcataatcagtgtaagttctcttaaatttctcatatttgttttataattataaagtattatttatgttgttgttcatcatccataataatat |
7522861 |
T |
|
| Q |
229 |
actatgtt |
236 |
Q |
| |
|
|||||||| |
|
|
| T |
7522862 |
actatgtt |
7522869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 7126526 - 7126433
Alignment:
| Q |
5 |
tatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtccttttatcaagaatgatagaag |
104 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||| ||| || ||||||||||| |||||||||||| || ||||||||||||| |
|
|
| T |
7126526 |
tatcatatcaagacttgatttctagct----tttgacaattgttttgtcaagtcatt--cttaggctgctgagttgtccttttttccagaatgatagaag |
7126433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 7485988 - 7486061
Alignment:
| Q |
165 |
tttctcctatttgttttataattataaagaatt--ttatgttgttttttatcatccataataatctactatgtt |
236 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||| |||||||||| | |||||||||||||||||||||||| |
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|
| T |
7485988 |
tttctcatatttgttttacaattataaagtattatttatgttgttgctcgtcatccataataatctactatgtt |
7486061 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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