View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10392_low_31 (Length: 242)
Name: NF10392_low_31
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5023639 - 5023862
Alignment:
| Q |
1 |
aatcctcccctctctttaatcaaaataaacccttcggctcaattttgaagtttaaatgggaggactttggaaggatgggagtnnnnnnnnnnnnnnnnnn |
100 |
Q |
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| T |
5023639 |
aatcctcccctctctttaatcaaaataaacccttcggctcaattttgaagtttaaatgggaggactttggaaggatgggagtaaaagaaaaaatagataa |
5023738 |
T |
|
| Q |
101 |
nnncttccacctattttgagaatgtttttgtaacgaatgataaatgattgtttatgattaatgtattttaaataatgagagtacaaaaccgtctaaaatc |
200 |
Q |
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| T |
5023739 |
aaacttccacctattttgagaatgtttttgttacgaatgataaatgattgtttatgattaatgtattttaaataatgagagtacaaaaccgtctaaaatc |
5023838 |
T |
|
| Q |
201 |
ctccttcaattcaatttgtgagct |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
5023839 |
ctccttcaattcaatttgtgagct |
5023862 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 1175863 - 1175914
Alignment:
| Q |
123 |
tgtttttgtaacgaatgataaatgattgtttatgattaatgtattttaaata |
174 |
Q |
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| T |
1175863 |
tgtttttgtagagaatgataaatgaatgtttatgattaatatatttttaata |
1175914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 5193229 - 5193179
Alignment:
| Q |
123 |
tgtttttgtaacgaatgataaatgattgtttatgattaatgtattttaaat |
173 |
Q |
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| T |
5193229 |
tgtttttgtacagaataataaatgaatgtttatgattaatatattttaaat |
5193179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 32123635 - 32123582
Alignment:
| Q |
114 |
ttttgagaatgtttttgtaacgaatgataaatgattgtttatgattaatgtatt |
167 |
Q |
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|||||| | ||||||||||| ||||||||||||| ||||||| |||||| |||| |
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| T |
32123635 |
ttttgaaagtgtttttgtaaagaatgataaatgaatgtttatcattaatatatt |
32123582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 7181383 - 7181435
Alignment:
| Q |
117 |
tgagaatgtttttgtaacgaatgataaatgattgtttatgattaatgtatttt |
169 |
Q |
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| T |
7181383 |
tgagaatgtttttgtagagaatgataaaagaatgcttatgattaatatatttt |
7181435 |
T |
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