View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10392_low_34 (Length: 237)
Name: NF10392_low_34
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 36 - 218
Target Start/End: Complemental strand, 5713393 - 5713212
Alignment:
| Q |
36 |
cggggtgtggggggtatagaaatgatggtgtggaattcatgtagacggattaatagaaatctaagagtcattgagagagagtgaggctagttgatccgcc |
135 |
Q |
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| T |
5713393 |
cggggtttggggggtatagaaatgatggtgtggaattcatgtagacggattaatagaa-tctaagagtcattgagagagagtgaggctagttgatccgcc |
5713295 |
T |
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| Q |
136 |
gggctgtttccttgctgttgaccaacatttctcaacacctccatggcttcagcaactttagccttgagagcatctggtgactc |
218 |
Q |
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| T |
5713294 |
gggctgtttccttgctgttgactaacatttctcaacacctccatggcttcagcaactttagccttgagagcatctggtgactc |
5713212 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 47003651 - 47003760
Alignment:
| Q |
109 |
agagagagtgaggctagttgatccgccgggctgtttccttgctgttgaccaacatttctcaacacctccatggcttcagcaactttagccttgagagcat |
208 |
Q |
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|||||||| || || |||||||| | |||||||| |||||| || |||||||||||||||| |||| ||| ||||||||||||| ||||||||| | |
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| T |
47003651 |
agagagagagaagcaagttgatcagttgggctgttcgattgctgctgtgcaacatttctcaacacatccacggcctcagcaactttagtcttgagagcct |
47003750 |
T |
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| Q |
209 |
ctggtgactc |
218 |
Q |
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|||||||||| |
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| T |
47003751 |
ctggtgactc |
47003760 |
T |
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