View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10392_low_36 (Length: 224)
Name: NF10392_low_36
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 1350755 - 1350912
Alignment:
| Q |
49 |
agagaaattgtaatgagtaaccttatgaacaaaactcttctcaacaattatacaagttctagttctgtgacattgcttgtgctatctactcaattgataa |
148 |
Q |
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| T |
1350755 |
agagaaattgtaatgagtaaccttatgaacaaaactcttctcaacaattatacaagttctagttctgtgacattgcttgtgctatctactcaattgataa |
1350854 |
T |
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| Q |
149 |
tctcattttatgttcatagttggtcttgtgaagttggtgtattactgtttggtttctt |
206 |
Q |
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| T |
1350855 |
tctcattttatgttcatagttggtcttgtgaagttggtgtattactgtttggtttctt |
1350912 |
T |
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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 1361280 - 1361318
Alignment:
| Q |
61 |
atgagtaaccttatgaacaaaactcttctcaacaattat |
99 |
Q |
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| T |
1361280 |
atgagtaaccttatggataaaactcttctcaacaattat |
1361318 |
T |
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