View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10392_low_37 (Length: 217)

Name: NF10392_low_37
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10392_low_37
NF10392_low_37
[»] chr6 (4 HSPs)
chr6 (16-203)||(15005187-15005374)
chr6 (26-129)||(15889994-15890097)
chr6 (125-203)||(26506720-26506798)
chr6 (158-203)||(15892977-15893022)
[»] chr3 (8 HSPs)
chr3 (26-203)||(18969713-18969901)
chr3 (26-203)||(39656120-39656310)
chr3 (26-203)||(48421353-48421544)
chr3 (26-203)||(22274822-22275009)
chr3 (26-204)||(13838516-13838704)
chr3 (125-202)||(16744686-16744763)
chr3 (26-114)||(15468796-15468882)
chr3 (125-200)||(2449629-2449704)
[»] scaffold0075 (1 HSPs)
scaffold0075 (29-203)||(4562-4748)
[»] chr4 (10 HSPs)
chr4 (26-203)||(19559142-19559330)
chr4 (30-203)||(34394873-34395060)
chr4 (125-203)||(34196595-34196673)
chr4 (129-203)||(16225559-16225633)
chr4 (26-106)||(34177921-34178003)
chr4 (26-129)||(9795100-9795201)
chr4 (125-200)||(10488348-10488423)
chr4 (125-203)||(26679814-26679892)
chr4 (125-200)||(16328328-16328403)
chr4 (26-91)||(49071638-49071703)
[»] scaffold0116 (1 HSPs)
scaffold0116 (26-203)||(29707-29898)
[»] scaffold0063 (1 HSPs)
scaffold0063 (16-203)||(44392-44590)
[»] chr8 (9 HSPs)
chr8 (28-203)||(23217656-23217842)
chr8 (11-201)||(22321719-22321921)
chr8 (26-203)||(2544578-2544765)
chr8 (26-129)||(41507256-41507358)
chr8 (26-129)||(24929244-24929345)
chr8 (125-200)||(5237873-5237948)
chr8 (125-200)||(24661650-24661725)
chr8 (125-200)||(43685332-43685407)
chr8 (125-203)||(22907785-22907863)
[»] chr2 (3 HSPs)
chr2 (26-203)||(25601640-25601831)
chr2 (125-200)||(14906842-14906917)
chr2 (125-200)||(23819857-23819932)
[»] scaffold1734 (1 HSPs)
scaffold1734 (26-203)||(1015-1206)
[»] scaffold0021 (1 HSPs)
scaffold0021 (26-203)||(22324-22515)
[»] scaffold0507 (1 HSPs)
scaffold0507 (68-203)||(4147-4292)
[»] chr5 (8 HSPs)
chr5 (125-203)||(25004593-25004671)
chr5 (26-128)||(4200274-4200374)
chr5 (125-203)||(17472145-17472223)
chr5 (125-203)||(2031430-2031508)
chr5 (26-129)||(2031516-2031618)
chr5 (125-200)||(25900808-25900883)
chr5 (125-203)||(21233930-21234008)
chr5 (154-203)||(4200412-4200461)
[»] scaffold0057 (1 HSPs)
scaffold0057 (26-203)||(5661-5850)
[»] scaffold0079 (1 HSPs)
scaffold0079 (26-203)||(4119-4306)
[»] chr7 (5 HSPs)
chr7 (26-128)||(13911314-13911415)
chr7 (24-84)||(13351861-13351921)
chr7 (125-200)||(15441966-15442041)
chr7 (153-203)||(7292635-7292685)
chr7 (131-203)||(13351731-13351803)
[»] chr1 (2 HSPs)
chr1 (26-203)||(2421282-2421471)
chr1 (125-200)||(51452289-51452364)
[»] scaffold0009 (1 HSPs)
scaffold0009 (26-203)||(271651-271838)
[»] scaffold0122 (2 HSPs)
scaffold0122 (26-128)||(24637-24738)
scaffold0122 (154-203)||(24776-24825)
[»] scaffold0032 (2 HSPs)
scaffold0032 (26-129)||(13733-13834)
scaffold0032 (154-203)||(13871-13920)
[»] scaffold0160 (2 HSPs)
scaffold0160 (125-203)||(3139-3217)
scaffold0160 (26-129)||(3225-3327)
[»] scaffold0001 (4 HSPs)
scaffold0001 (26-127)||(171615-171715)
scaffold0001 (26-127)||(177318-177418)
scaffold0001 (154-203)||(171527-171576)
scaffold0001 (154-203)||(177230-177279)
[»] scaffold0141 (1 HSPs)
scaffold0141 (125-200)||(22326-22401)
[»] scaffold0012 (1 HSPs)
scaffold0012 (26-75)||(253429-253479)
[»] scaffold0008 (1 HSPs)
scaffold0008 (26-128)||(31965-32065)
[»] scaffold0124 (1 HSPs)
scaffold0124 (125-200)||(1984-2059)
[»] scaffold0078 (1 HSPs)
scaffold0078 (153-203)||(37660-37710)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 15005187 - 15005374
Alignment:
Q  16 atgaattgtggttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcga 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15005187 atgaattgtggttgttgttgttgaagacttgttgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcga 15005286  T
Q  116 catgttagagcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15005287 catgttagagcctcggatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 15005374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 15889994 - 15890097
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattc-aaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttaga 124  Q
    ||||| ||||||||||||||||||||||  ||||| || ||  ||||||||  ||||||||| |||| | |||||||||||||||||||||| |||||||    
T  15889994 gttgtcgttgttgaagacttattgttttgagaaaaccatttttaaacaatttgataacttatccaaa-tgccacgaaacgagtgagttcgacgtgttaga 15890092  T
Q  125 gcctc 129  Q
    |||||    
T  15890093 gcctc 15890097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 26506798 - 26506720
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||||| ||||||||||||| | | ||||||| |||||||||||||| |||  ||| ||||||||| |||||||||||||    
T  26506798 gcctcggatcatttttgacaaatgggggtttcaaacattcgattttagggcaaaaatggcgaaaatccgcggccgaaac 26506720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 15893022 - 15892977
Alignment:
Q  158 aacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  15893022 aacattcaattttggggcgaaattggcgaaaacccgcggccgaaac 15892977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 18969901 - 18969713
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttaga- 124  Q
    ||||||||||||||||||||||||||||  ||||||||||| |||||||| |||||||||||| ||||||||| ||||||| ||||||||| |||||||     
T  18969901 gttgttgttgttgaagacttattgttttgagaaaatcaatttaaacaatttcataacttattc-aaattccacaaaacgagcgagttcgacgtgttagag 18969803  T
Q  125 -----------gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
               |||||| ||||||||| |||||| ||||||||||  |||||||||||||| ||||||||||||||||||||||||||||    
T  18969802 cctcgagttatgcctcatatcatttttaacgattgggggttttaagtattcgattttggggcgaaattggcgaaaacccgcggccgaaac 18969713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 39656310 - 39656120
Alignment:
Q  26 gttgttgttgttgaagacttattgtttt-aggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttaga 124  Q
    ||||||||| |||||||||||||||||| || ||||||| || |||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||||    
T  39656310 gttgttgttattgaagacttattgttttgagaaaaatcattttaaacaatttcataacttattcaaaatgccacgaaacgagcgagttcgacgtgttaga 39656211  T
Q  125 ------------gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
                ||||| ||||| ||||||||||| ||||||||| |||||||||||||| |  |||||||| |||||||||||| |||||    
T  39656210 atctcgggttatgcctcggatcacttttgacgattgggggttttacacattcgattttggagcaaaattggcaaaaacccgcggcagaaac 39656120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 48421544 - 48421353
Alignment:
Q  26 gttgttgttgttgaagacttattgtttt-aggaaaatcaattc-aaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttag 123  Q
    |||||||||||||||||||||||||||| || ||||||| ||  |||||||| ||||||||||||||||| ||| |||||||| ||||||||| |||||     
T  48421544 gttgttgttgttgaagacttattgttttgagaaaaatcatttttaaacaatttcataacttattcaaaatgccatgaaacgagcgagttcgacgtgttat 48421445  T
Q  124 ag------------cctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
     |            |||| ||||| ||||||||||| |||||||||||||||||||||||| | |||||||||||||| || ||||||||||    
T  48421444 tgtctcgggttatgcctctgatcacttttgacgattgggggttttaaacattcgattttggagcgaaattggcgaaaatccacggccgaaac 48421353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 22275009 - 22274822
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag 125  Q
    |||||||||||||||||||| |||||||  |||||||| || || ||||| |||||||  | |||| | |||||||||||| ||||||||| ||||||||    
T  22275009 gttgttgttgttgaagacttgttgttttgagaaaatcattttaa-caatttcataactcgtacaaa-tgccacgaaacgagcgagttcgacgtgttagag 22274912  T
Q  126 ------------cctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
                |||| ||||| |||||| |||||||||||||| ||||| |||||||| | |||||||||||||| |||||||||||||    
T  22274911 tctcgggttatgcctcggatcacttttgatgattaggggttttacacatttgattttggagcgaaattggcgaaaatccgcggccgaaac 22274822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 13838704 - 13838516
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag 125  Q
    ||||||||||||||||||||||||||||  ||||||| ||| ||| |||| |||||||| | | |||| |||||||||||| ||||||||  ||||||||    
T  13838704 gttgttgttgttgaagacttattgttttgagaaaatc-atttaaaaaatttcataacttgtac-aaatgccacgaaacgagcgagttcgatgtgttagag 13838607  T
Q  126 c------------ctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaact 204  Q
    |            ||| ||||| |||||| ||||  ||  ||||||||||||||||| ||  |||||||| ||||||||||||||||||||    
T  13838606 cctcgggttatgtctcggatcacttttgatgattgaggactttaaacattcgatttttggtcgaaattggtgaaaacccgcggccgaaact 13838516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 16744686 - 16744763
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaa 202  Q
    ||||| ||||| |||||| ||||  || |||||||||||||||||| |   |||||||||||||||| ||||||||||    
T  16744686 gcctcggatcacttttgatgattgaggattttaaacattcgatttttgatcgaaattggcgaaaacctgcggccgaaa 16744763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 15468796 - 15468882
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcg 114  Q
    ||||||||||||||||||||||||||||  ||||||| |||  ||||||| |||||| | | | |||| |||||||||||| |||||||    
T  15468796 gttgttgttgttgaagacttattgttttgagaaaatc-attttaacaatttcataacgtgtac-aaatgccacgaaacgagcgagttcg 15468882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 2449629 - 2449704
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 200  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  2449629 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 2449704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 4748 - 4562
Alignment:
Q  29 gttgttgttgaagacttattgtttt-aggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagagcc 127  Q
    ||||||||||||||||||||||||| || |||||||||| |||||||| |||||||||||||||||  || |||||||| ||||||||| ||||||||||    
T  4748 gttgttgttgaagacttattgttttgagaaaaatcaatttaaacaatttcataacttattcaaaatgtcatgaaacgagcgagttcgacgtgttagagcc 4649  T
Q  128 ------------tcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
                || ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  4648 tcgggttatgcatcggatcatttttgacgatt-ggggttttaaacattcgattttggagcgaaattggcgaaaactcgcggccgaaac 4562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 19559330 - 19559142
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttaga- 124  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||||||  ||||||||||| |||| || ||||| ||||||||||||| |||||||     
T  19559330 gttgttgttgttgaagacttattgttttgagaaaatcaatttaaacaattttataacttattc-aaatgccccgaaatgagtgagttcgacgtgttagag 19559232  T
Q  125 -----------gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
               ||||| ||||||||||||||||||||| |||||||||||||||||||| | ||||||||| ||||||||||| ||||||    
T  19559231 cctcgggttatgcctcggatcatttttgacgattagggtttttaaacattcgattttggagcgaaattggcaaaaacccgcgggcgaaac 19559142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 30 - 203
Target Start/End: Complemental strand, 34395060 - 34394873
Alignment:
Q  30 ttgttgttgaagacttattgtttt-aggaaaatcaattcaaa-caattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag-- 125  Q
    ||||||||||||| || ||||||| || ||||||| || ||| ||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||      
T  34395060 ttgttgttgaagatttgttgttttgagaaaaatcattttaaaacaattccataacttattcaaaatgccacgaaacgagcgagttcgacgtgttagagtc 34394961  T
Q  126 ----------cctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
              |||| ||||| |||||| |||||||||||||| |||||| ||||||| | ||||||||||||||||||||||||||||    
T  34394960 tcgggttatgcctcggatcacttttgatgattaggggttttacacattcaattttggagcgaaattggcgaaaacccgcggccgaaac 34394873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 34196595 - 34196673
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||||    
T  34196595 gcctcggatcacttttgacgattgggggttttaaacattcgattttggagcgaaattggcgaaaacccgcggcagaaac 34196673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 16225559 - 16225633
Alignment:
Q  129 cagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||| |||| | |||||||||||| ||||||||    
T  16225559 cagatcatttttgacgattgggggtttaaaacattcgattttggggcgaaaatagcgaaaacccgcagccgaaac 16225633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 34177921 - 34178003
Alignment:
Q  26 gttgttgttgttgaagacttattgtttt-aggaaaatcaattc-aaacaattccataacttattcaaaattccacgaaacgag 106  Q
    |||||||||||||||||||||||||||| || ||||||| ||  |||||||| ||||||||||||||||| ||||||||||||    
T  34177921 gttgttgttgttgaagacttattgttttgagaaaaatcattttgaaacaatttcataacttattcaaaatgccacgaaacgag 34178003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 9795201 - 9795100
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag 125  Q
    ||||||||||||||||||||||||||||  ||||||| |||  ||||||| |||||||| | | |||| |||||||||||| ||||||||  ||||||||    
T  9795201 gttgttgttgttgaagacttattgttttgagaaaatc-attttaacaatttcataacttgtac-aaatgccacgaaacgagcgagttcgatgtgttagag 9795104  T
Q  126 cctc 129  Q
    ||||    
T  9795103 cctc 9795100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 10488423 - 10488348
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 200  Q
    ||||||||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  10488423 gcctcagatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 10488348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 26679892 - 26679814
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||||| ||||| |||||| ||||  || |||||||||||||||||| |   |||||||||||||| |||||||||||||    
T  26679892 gcctcggatcacttttgatgattgaggattttaaacattcgatttttgatcgaaattggcgaaaatccgcggccgaaac 26679814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 16328328 - 16328403
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 200  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  16328328 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 16328403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 49071703 - 49071638
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaa 91  Q
    |||||||||||||||||||| || ||||  |||||||  || |||||||| |||||||| ||||||    
T  49071703 gttgttgttgttgaagacttgttattttgagaaaatctttttaaacaatttcataacttgttcaaa 49071638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 29898 - 29707
Alignment:
Q  26 gttgttgttgttgaagacttattgtttt-aggaaaatcaattcaaa-caattccataacttattcaaaattccacgaaacgagtgagttcgacatgttag 123  Q
    ||||||||||||||||| || ||||||| || ||||||| || ||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  29898 gttgttgttgttgaagatttgttgttttgagaaaaatcattttaaaacaattccataacttattcaaaatgccacgaaacgagtgagttcgacgtgttag 29799  T
Q  124 a------------gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    |            ||||| ||||| |||||| |||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||    
T  29798 agtcttgggctatgcctcggatcacttttgatgattaggggttttacacattcgattttggagcgaaattggcaaaaacccgcggccgaaac 29707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 44392 - 44590
Alignment:
Q  16 atgaattgtggttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcga 115  Q
    ||||||||| ||||||||||||||||||||||| ||||  ||||||||||| ||||||||  ||||||||||| |||| |||| ||||||||||||||||    
T  44392 atgaattgttgttgttgttgttgaagacttattattttgagaaaatcaatttaaacaattttataacttattc-aaatgccacaaaacgagtgagttcga 44490  T
Q  116 catgttaga------------gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
      |||||||            |||||||||||||||| | |||| ||||||||||||||||||||||| || ||||||||||||||| ||||| ||||||    
T  44491 tgtgttagagcctcgggttatgcctcagatcattttttatgattgggggttttaaacattcgattttgaggcgaaattggcgaaaacacgcggacgaaac 44590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 23217842 - 23217656
Alignment:
Q  28 tgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag-- 125  Q
    ||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||| |||| || ||||||||||||||||||| ||||||||      
T  23217842 tgttgttgttgaagacttattgttttaagaaaaacaatttaaacaatttcataacttattc-aaatgccgcgaaacgagtgagttcgacgtgttagagcc 23217744  T
Q  126 ----------cctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
              |||| ||||||| || ||||||  ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||    
T  23217743 tcgggttattcctcggatcattcttaacgattgagggttttaaacattcgattttggggcgaaattggcaaaaacctgcggccgaaac 23217656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 22321719 - 22321921
Alignment:
Q  11 gagagatgaattgtggttgttgttgttgaagacttattgttttaggaaaatcaattcaaa-caattccataacttattcaaaattccacgaaacgagtga 109  Q
    |||| |||||| || ||||||||||||||| | ||||||||||  ||||||||||||||| ||||| |||||||||| | |||| |||||||||||| ||    
T  22321719 gagaaatgaatggttgttgttgttgttgaacatttattgttttgagaaaatcaattcaaatcaatttcataacttatac-aaatgccacgaaacgagcga 22321817  T
Q  110 gttcgacatgttagag------------cctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggc 197  Q
    ||| ||| ||||||||            |||| ||||| |||||| |||| ||| |||||||||||||||| | ||  ||||||||||||||||||||||    
T  22321818 gtttgacgtgttagagcctcgggttatacctcggatcacttttgatgattggggattttaaacattcgattcttggtcgaaattggcgaaaacccgcggc 22321917  T
Q  198 cgaa 201  Q
    ||||    
T  22321918 cgaa 22321921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 2544765 - 2544578
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag 125  Q
    ||||||||||||||||||||||||||||  ||||||| |||  || |||| |||||||| | | |||| ||||||||||||| |||||||  ||||||||    
T  2544765 gttgttgttgttgaagacttattgttttgagaaaatc-attttaataatttcataacttgtac-aaatgccacgaaacgagtaagttcgatgtgttagag 2544668  T
Q  126 cctca------------gatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    |||||            ||||| |||||| ||||  ||  ||||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  2544667 cctcaggttatgcctcggatcacttttgatgattgaggactttaaacattcgatttttggtcgaaattggcgaaaacccgcggccgaaac 2544578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 41507256 - 41507358
Alignment:
Q  26 gttgttgttgttgaagacttattgtttt-aggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttaga 124  Q
    |||||||||||||||||||||||||||| || |||||| |||  ||||||| |||||||| | | |||| |||||||||||| ||||||||  |||||||    
T  41507256 gttgttgttgttgaagacttattgttttgagaaaaatc-attttaacaatttcataacttgtac-aaatgccacgaaacgagcgagttcgatgtgttaga 41507353  T
Q  125 gcctc 129  Q
    |||||    
T  41507354 gcctc 41507358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 24929244 - 24929345
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag 125  Q
    ||||||||||||||||||||||||||||  ||||||| |||  ||||||| |||||||| | | | || |||||||||||| ||||||||  ||||||||    
T  24929244 gttgttgttgttgaagacttattgttttgagaaaatc-attttaacaatttcataacttgtac-atatgccacgaaacgagcgagttcgatgtgttagag 24929341  T
Q  126 cctc 129  Q
    ||||    
T  24929342 cctc 24929345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 5237948 - 5237873
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 200  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  5237948 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 5237873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 24661650 - 24661725
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 200  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  24661650 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 24661725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 43685407 - 43685332
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 200  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  43685407 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 43685332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 22907785 - 22907863
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||||| ||||| |||||| ||||  || |||||||||||| |||||     ||||||||||||||||||||||||||||    
T  22907785 gcctcggatcacttttgatgattgaggattttaaacattctattttttatcgaaattggcgaaaacccgcggccgaaac 22907863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 25601831 - 25601640
Alignment:
Q  26 gttgttgttgttgaagacttattgtttt-aggaaaatcaattcaaa-caattccataacttattcaaaattccacgaaacgagtgagttcgacatgttag 123  Q
    ||||||||||||||||| || ||||||| || ||||||| || ||| ||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||    
T  25601831 gttgttgttgttgaagatttgttgttttgagaaaaatcattttaaaacaattccataacttattcaaaatgccacgaaacgagcgagtttgacgtgttag 25601732  T
Q  124 ag------------cctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||            |||||||||| |||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||    
T  25601731 agtctcgggttatgcctcagatcacttttgatgattaggggttttacacattcgattttggagcgaaattggcgaaaacccgcggccgaaac 25601640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 14906842 - 14906917
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 200  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  14906842 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 14906917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 23819932 - 23819857
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 200  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  23819932 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 23819857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1734 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold1734
Description:

Target: scaffold1734; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 1206 - 1015
Alignment:
Q  26 gttgttgttgttgaagacttattgtttt-aggaaaatcaattcaaa-caattccataacttattcaaaattccacgaaacgagtgagttcgacatgttag 123  Q
    ||||||||||||||||| || || |||| || ||||||| || ||| ||||||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  1206 gttgttgttgttgaagatttgtttttttgagaaaaatcattttaaaacaattccataacttattcaaaatgccacgaaacgagcgagttcgacgtgttag 1107  T
Q  124 a------------gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    |            ||| | ||||| |||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||| ||||||||    
T  1106 aatctcgggttatgccacggatcagttttgatgattaggggttttacacattcgattttggagcgaaattggcgaaaacccgcagccgaaac 1015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 22324 - 22515
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaa-tcaattc-aaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttag 123  Q
    ||||||||| ||||||||||||||||||   |||| ||| ||  |||| ||| ||||||||||||||||| ||| |||||||| ||||||||| ||||||    
T  22324 gttgttgttattgaagacttattgttttgataaaagtcatttttaaacgatttcataacttattcaaaatgccaagaaacgagcgagttcgacgtgttag 22423  T
Q  124 ag------------cctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||            ||||| | |||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  22424 agtctcgggttatgcctcataccatttttgacgattgggggttttaaacattcgattttggagcgaaattggcgaaaacccgcggccaaaac 22515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 203
Target Start/End: Original strand, 4147 - 4292
Alignment:
Q  68 aaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag------------cctcagatcatttttgacgattaggggttt 155  Q
    |||||||| ||||||||||||||| | |||||||||||| ||||||||| ||||||||            |||||||||| ||||||||||| |||||||    
T  4147 aaacaatttcataacttattcaaa-tgccacgaaacgagcgagttcgacgtgttagagtctcgggttatgcctcagatcacttttgacgattgggggttt 4245  T
Q  156 taaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    | ||||||||||||||| |||||||||||||||| |||||||||||||    
T  4246 tcaacattcgattttggagtgaaattggcgaaaa-ccgcggccgaaac 4292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 25004671 - 25004593
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  25004671 gcctcggatcacttttgacgattgggggttttaaacattcgattttggagcgaaattggcgaaaacccgcggccgaaac 25004593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 4200274 - 4200374
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag 125  Q
    ||||||||||||||||||||||||||||  ||||||| |||  || |||| |||||||| | | |||| |||||||||||| ||||||||  ||||||||    
T  4200274 gttgttgttgttgaagacttattgttttgagaaaatc-attttaataatttcataacttgtac-aaatgccacgaaacgagcgagttcgatgtgttagag 4200371  T
Q  126 cct 128  Q
    |||    
T  4200372 cct 4200374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 17472145 - 17472223
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||||| ||||| |||||| ||||  ||  ||||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  17472145 gcctcggatcacttttgatgattgaggactttaaacattcgatttttggtcgaaattggcgaaaacccgcggccgaaac 17472223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 2031508 - 2031430
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||||| ||||| |||||| ||||  ||  ||||||||||||||||| ||  |||||||||||||||||||||| |||||    
T  2031508 gcctcggatcacttttgatgattgaggactttaaacattcgatttttggtcgaaattggcgaaaacccgcggctgaaac 2031430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 2031618 - 2031516
Alignment:
Q  26 gttgttgttgttgaagacttattgtttt-aggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttaga 124  Q
    |||||||||| ||||||||||||||||| || |||||| |||  ||||||| |||||||| | | |||| |||| ||||||| ||||||||  |||||||    
T  2031618 gttgttgttgatgaagacttattgttttgagaaaaatc-attttaacaatttcataacttgtac-aaatgccacaaaacgagcgagttcgatgtgttaga 2031521  T
Q  125 gcctc 129  Q
    |||||    
T  2031520 gcctc 2031516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 25900808 - 25900883
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 200  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  25900808 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 25900883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 21233930 - 21234008
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||||| ||||| |||||| ||||  || |||||||||||||||||| |   |||||||||||||| ||||||| |||||    
T  21233930 gcctcggatcacttttgatgattgaggattttaaacattcgatttttgatcgaaattggcgaaaatccgcggctgaaac 21234008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 4200412 - 4200461
Alignment:
Q  154 tttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    |||||| |||||||||| ||   |||||||||||||||||||||||||||    
T  4200412 tttaaatattcgatttttggtcaaaattggcgaaaacccgcggccgaaac 4200461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 5850 - 5661
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaa--caattccataacttattcaaaattccacgaaacgagtgagttcgacatgttag 123  Q
    |||||||||||| ||||||| ||||||| |||||||| |||  ||  ||||| || |||||||||||| | || ||||||||||||||||||| ||||||    
T  5850 gttgttgttgtt-aagacttgttgttttgggaaaatccattttaaaccaatttcaaaacttattcaaa-tgccgcgaaacgagtgagttcgacgtgttag 5753  T
Q  124 agcctcag------------atcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    |||||| |            ||||||||||| || | |||||||||||||||||||||||| | |||| ||||||||||||| |||||||||    
T  5752 agcctcgggttatgcctcggatcatttttgatgaatgggggttttaaacattcgattttggagcgaaaatggcgaaaacccgtggccgaaac 5661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 4119 - 4306
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag 125  Q
    ||||||||||||||||||||| ||||||  ||||| || || |||||||| |||||||| || ||||| ||| ||||||||||  |||||  ||||| ||    
T  4119 gttgttgttgttgaagacttaatgttttgagaaaaccattttaaacaatttcataacttgtt-aaaatgccatgaaacgagtgtattcgatttgttaaag 4217  T
Q  126 cctcag------------atcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    |||| |            |||||||| ||||  | |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  4218 cctcgggttgtgccttggatcatttt-gacggatgggggttttaaacattcgattttggggggaaattggcaaaaacccgcggccgaaac 4306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 13911314 - 13911415
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag 125  Q
    ||||||||||||||||||||||||||||  |||||||| ||  ||||||| |||||||| | | |||| |||||||||||| ||||||||  ||||||||    
T  13911314 gttgttgttgttgaagacttattgttttgagaaaatcatttttaacaatttcataacttgtac-aaatgccacgaaacgagcgagttcgatgtgttagag 13911412  T
Q  126 cct 128  Q
    |||    
T  13911413 cct 13911415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 13351921 - 13351861
Alignment:
Q  24 tggttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataactt 84  Q
    ||||||||||||||||||||||||||||||  |||||||| || |||||||| || |||||    
T  13351921 tggttgttgttgttgaagacttattgttttgagaaaatcattttaaacaatttcacaactt 13351861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 15441966 - 15442041
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 200  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  15441966 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 15442041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 7292685 - 7292635
Alignment:
Q  153 ttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    |||||||||||||||||| |    |||||||||||||||||||||||||||    
T  7292685 ttttaaacattcgatttttgatcaaaattggcgaaaacccgcggccgaaac 7292635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 13351803 - 13351731
Alignment:
Q  131 gatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    |||||||||||| || ||||||   |||  |||||||||||| | |||| ||||||||||||| |||||||||    
T  13351803 gatcatttttgatgaataggggacctaactattcgattttggagcgaaaatggcgaaaacccgtggccgaaac 13351731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 2421282 - 2421471
Alignment:
Q  26 gttgttgttgttgaagacttattgtttt-aggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttaga 124  Q
    |||||||||||||||||||||||||||| || ||||||| || |||||||| |||||||| | | ||||  || |||||||| ||||||||  |||||||    
T  2421282 gttgttgttgttgaagacttattgttttgagaaaaatcattttaaacaatttcataacttgtac-aaatgtcatgaaacgagcgagttcgatgtgttaga 2421380  T
Q  125 ------------gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
                ||||| ||||| |||||| |||| ||   ||||| ||||||||||| ||  ||||||||||||||||||||||||||||    
T  2421381 gcctcgggttatgcctcggatcacttttgatgattgggaactttaaccattcgatttttggtcgaaattggcgaaaacccgcggccgaaac 2421471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 51452364 - 51452289
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 200  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  51452364 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 51452289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 271838 - 271651
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttaga- 124  Q
    ||||||||||||||||||||||||||||  ||||||| |||  ||||||| |||||||| | | |||| |||||||||||| ||||| ||  |||||||     
T  271838 gttgttgttgttgaagacttattgttttgagaaaatc-attttaacaatttcataacttgtac-aaatgccacgaaacgagcgagttagatgtgttagag 271741  T
Q  125 -----------gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
               ||||| ||||| |||||| ||||  ||  ||||||||||||||||| ||  ||||||||| ||||||||||||||||||    
T  271740 cctcgggttatgcctcggatcacttttgatgattgaggactttaaacattcgatttttggtcgaaattggcaaaaacccgcggccgaaac 271651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 24637 - 24738
Alignment:
Q  26 gttgttgttgttgaagacttattgtttt-aggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttaga 124  Q
    ||||||||||||||||| |||||||||| || |||||| |||  |||||||||||||||| | | |||| |||||||||||| ||||||||  |||||||    
T  24637 gttgttgttgttgaagaattattgttttgagaaaaatc-attttaacaattccataacttgtac-aaatgccacgaaacgagcgagttcgatgtgttaga 24734  T
Q  125 gcct 128  Q
    ||||    
T  24735 gcct 24738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 24776 - 24825
Alignment:
Q  154 tttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    |||||||||| |||||| ||  ||||||||||||||||||||||||||||    
T  24776 tttaaacatttgatttttggtcgaaattggcgaaaacccgcggccgaaac 24825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 13733 - 13834
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag 125  Q
    ||||||||||||||||||||||||||||  ||||||| |||  ||||||| |||||||| | | |||| |||||||||||| || |||||  ||||||||    
T  13733 gttgttgttgttgaagacttattgttttgagaaaatc-attttaacaatttcataacttgtac-aaatgccacgaaacgagcgatttcgatgtgttagag 13830  T
Q  126 cctc 129  Q
    ||||    
T  13831 cctc 13834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 13871 - 13920
Alignment:
Q  154 tttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||||||||||||||||| ||  ||||||||||||||| |||||| |||||    
T  13871 tttaaacattcgatttttggtcgaaattggcgaaaactcgcggcagaaac 13920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 3217 - 3139
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||||| ||||| |||||| |||| |||  |||||||||||||||||  |  ||||||||||||||||||||||||||||    
T  3217 gcctcggatcacttttgatgattggggactttaaacattcgattttttgtcgaaattggcgaaaacccgcggccgaaac 3139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 3327 - 3225
Alignment:
Q  26 gttgttgttgttgaagacttattgtttt-aggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttaga 124  Q
    |||||||||||||||||| ||||||||| || |||||| |||  ||||||| |||||||| | |  ||| |||||||||||| ||||||||  |||||||    
T  3327 gttgttgttgttgaagacgtattgttttgagaaaaatc-attttaacaatttcataacttgtac-gaatgccacgaaacgagcgagttcgatgtgttaga 3230  T
Q  125 gcctc 129  Q
    |||||    
T  3229 gcctc 3225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 171715 - 171615
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag 125  Q
    ||||||||||||||||||||||||||||  |||||||  ||  ||||||| ||||||||  | ||||| |||||||||||| || |||||  ||||||||    
T  171715 gttgttgttgttgaagacttattgttttgagaaaatcgtttttaacaatttcataactt-gtaaaaatgccacgaaacgagcgatttcgatgtgttagag 171617  T
Q  126 cc 127  Q
    ||    
T  171616 cc 171615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 177418 - 177318
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag 125  Q
    ||||||||||||||||||||||||||||  |||||||  ||  ||||||| ||||||||  | ||||| |||||||||||| || |||||  ||||||||    
T  177418 gttgttgttgttgaagacttattgttttgagaaaatcgtttttaacaatttcataactt-gtaaaaatgccacgaaacgagcgatttcgatgtgttagag 177320  T
Q  126 cc 127  Q
    ||    
T  177319 cc 177318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 171576 - 171527
Alignment:
Q  154 tttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||||||||||||||| | ||  |||||||||||||||||| |||||||||    
T  171576 tttaaacattcgattcttggtcgaaattggcgaaaacccggggccgaaac 171527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 177279 - 177230
Alignment:
Q  154 tttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    ||||||||||||||| | ||  |||||||||||||||||| |||||||||    
T  177279 tttaaacattcgattcttggtcgaaattggcgaaaacccggggccgaaac 177230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 22401 - 22326
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 200  Q
    ||||||||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  22401 gcctcagatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 22326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 253429 - 253479
Alignment:
Q  26 gttgttgttgttgaagacttattgtttt-aggaaaatcaattcaaacaatt 75  Q
    |||||||||||||||||||||||||||| || |||||||||| ||||||||    
T  253429 gttgttgttgttgaagacttattgttttgagaaaaatcaatttaaacaatt 253479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 31965 - 32065
Alignment:
Q  26 gttgttgttgttgaagacttattgttttaggaaaatcaattcaaacaattccataacttattcaaaattccacgaaacgagtgagttcgacatgttagag 125  Q
    |||||||||||| |||||||||||||||  ||||||| |||  || |||| |||||||| | | |||| |||||||||||| ||||||||  ||||||||    
T  31965 gttgttgttgtttaagacttattgttttgagaaaatc-attttaataatttcataacttgtac-aaatgccacgaaacgagcgagttcgatgtgttagag 32062  T
Q  126 cct 128  Q
    |||    
T  32063 cct 32065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 1984 - 2059
Alignment:
Q  125 gcctcagatcatttttgacgattaggggttttaaacattcgattttggggtgaaattggcgaaaacccgcggccga 200  Q
    ||||| ||||| |||||| ||||  || |||||||| ||||||||| |   |||||||||||||||||||||||||    
T  1984 gcctcggatcacttttgatgattgaggattttaaacgttcgatttttgatcgaaattggcgaaaacccgcggccga 2059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 37660 - 37710
Alignment:
Q  153 ttttaaacattcgattttggggtgaaattggcgaaaacccgcggccgaaac 203  Q
    |||||||||||||||||| |   ||||||||| ||||||||||||||||||    
T  37660 ttttaaacattcgatttttgatcgaaattggcaaaaacccgcggccgaaac 37710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University