View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10392_low_4 (Length: 571)
Name: NF10392_low_4
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 557
Target Start/End: Original strand, 31857367 - 31857912
Alignment:
| Q |
17 |
agttagagaaggatacaagatgtggcggtattgttgcgggggcaaagtgcaaccgtttattatcacattttaatttaattaaattgttgacaataaacac |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31857367 |
agttagtgaaggatacaagatgtggcggtattgttgtggggtcaaagtgcaaccgtttattatcacattttaatttaattaaattgttgacaataagcac |
31857466 |
T |
|
| Q |
117 |
tttctttcaacgaaaaa-gtttttatttatatatgtatgtacaacaagagggtcatataattccaaagagtaggtaacctgca-tttacttgtcattttc |
214 |
Q |
| |
|
|| ||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
31857467 |
ttcctttcaaggaaaaaggtttttatttatata--tatgtacaacaagagggtcatataattccaaagagtaggtaacctgcattttacttatcattttc |
31857564 |
T |
|
| Q |
215 |
ttacaatttgaagagtattttatagtatatataaataacctatccttcattaccttttcattaaaacttcatacatccataagtttaaaagaataacaga |
314 |
Q |
| |
|
||| ||||| ||||||||| ||| ||||||||||||||| || ||||||||| ||||||||||| || ||| ||||| |||| | | || ||||||| | |
|
|
| T |
31857565 |
ttagaatttcaagagtattctatggtatatataaataacatagccttcattaacttttcattaacac-tcaaacatcaataaatatcaacaaataacaaa |
31857663 |
T |
|
| Q |
315 |
t--atataag----aattagttctaagataaaaggagtaatggcatttaaagagtatattatgtgtctagttatggtcctagtggcaaatatgtgtacac |
408 |
Q |
| |
|
| |||| || ||| |||| |||||||||||||||||||||||||||| |||||| | | ||||||||||||||||||||| ||||||||||| | |
|
|
| T |
31857664 |
tacatatcagagttaatcagtttcaagataaaaggagtaatggcatttaaagggtatatcctatttctagttatggtcctagtggccaatatgtgtactc |
31857763 |
T |
|
| Q |
409 |
aaaatgaagctcaatcaggttgtacatcaacactcactagcttgagcccttgtctaaactacataatggggagttcttcaaatccatcaacttcatgttg |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31857764 |
aaaatgaagctcaatcaggttgtacatcaacgatcactagcttgagcccttgtctaaactacataatggggagttcttcaaatccatcatcttcatgttg |
31857863 |
T |
|
| Q |
509 |
cacacaactttcaagtgtagtccaatcttctcctcagtgtctgtgctcc |
557 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31857864 |
ctcacaactttcaagtgtagtccaatcttctcctcagtgtctatgctcc |
31857912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University