View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10392_low_5 (Length: 546)
Name: NF10392_low_5
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 17 - 535
Target Start/End: Original strand, 47323426 - 47323944
Alignment:
| Q |
17 |
atgaaacagagttggtgaaattaacaatgaatttagcttcaacttgcttagaaaaaatctatgttgaatttgtatcagttaagagaagagttgagtatca |
116 |
Q |
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| T |
47323426 |
atgaaacagagttggtgaaattaacaatgaatttagcttcaacttgcttagaaaaaatctatgttgaatttgtatcagttaagagaagagttgagtatca |
47323525 |
T |
|
| Q |
117 |
cagaaacttgcttacaagaggtttaggtgatttggaaatggagaatcgaaaagccgaggaatgggctagtcaacttcaatgttggtctatttatcttctg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47323526 |
cagaaacttgcttacaagaggtttaggtgatttggaaatggagaatcgaaaagccgaggaatgggctagtcaacttcaatgttggtctatttatcttctg |
47323625 |
T |
|
| Q |
217 |
aattgttttgcttgcaaagattacaataagtctttgaatctcatatgcaaaaaagagttcttaaatgatttgtgtgatatgtggggtggattgatgaatc |
316 |
Q |
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| T |
47323626 |
aattgttttgcttgcaaagattacaataagtctttgaatctcatatgcaaaaaagagttcttaaatgatttgtgtgatatgtggggtggattaatgaata |
47323725 |
T |
|
| Q |
317 |
acacttcaccaggtgggtttggactcattagaatcctttgttataataacattggaagnnnnnnnnttgttgagttaccaaaagttgtgaaaacactttg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47323726 |
acacttcaccaggtgggtttggactcattagaatcctttgttataataacattggaagaaaaaaaattgttgagttaccaaaagttgtgaaaacactttg |
47323825 |
T |
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| Q |
417 |
taacctctcaagatcttgtgatgattggcaataccttggtatagattgtcttttattgcttctcaaggatgaaaatacaaggtacaaagttattattgat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47323826 |
taacctctcaagatcttgtgatgattggcaataccttggtatagattgtcttttattgcttctcaaggatgaaaatacaaggtacaaagttattattgat |
47323925 |
T |
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| Q |
517 |
gatattgatgttgtttcat |
535 |
Q |
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| T |
47323926 |
gatgttgatgttgtttcat |
47323944 |
T |
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