View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10392_low_6 (Length: 526)
Name: NF10392_low_6
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 809736 - 809225
Alignment:
| Q |
1 |
gaaatattgtttgttgcttttttcttcttc-agcataacatgttatgtgagtaaaaagaacatagcctgttatcccgtctggtctaaaaatgtgagaaat |
99 |
Q |
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| T |
809736 |
gaaatattgtttgttgctttttttttcttccagcataacatgttatgtgagtaaaaagaacatagcctgttatcccgtctggtctaaaaatgtgagaaat |
809637 |
T |
|
| Q |
100 |
tcgagcttaagcatattatactatacaatattcgtcagactaaaggaaaataaggtccttcaaagcttgattcttgagtnnnnnnnn-ctgaactcaata |
198 |
Q |
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| T |
809636 |
tcgagcttaagcatattatactatacaatattcgtcagacaaaaggaaaataaggtccttcaaagcttgattcttgagtaaaaaaaaactgaactcaata |
809537 |
T |
|
| Q |
199 |
aacagctaacaacaaagcataagataaaaatgtttgatgaatctatactcagaaatatcctaaagcatataacaaataacaatactgaaatcaactctaa |
298 |
Q |
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| T |
809536 |
a-cagctaacaacaaagcataagataaaaatgttagatgaatctatactcagaaatatcctaaagcatataacaattaacaatactgaaatcaactctaa |
809438 |
T |
|
| Q |
299 |
tattgaccttttcaatagcacagttgaagagcttcattgcaatttgcaagtacaaaaatcaaatgcaaatgcccaaaaggtaaatatggagtcactccat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
809437 |
tattgaccttttcaatagcacagttgaagagcttcattgcaatttgcaagtacaaaaatcaaatgcaaatgcccaaaaggtaaatatggagtcactccat |
809338 |
T |
|
| Q |
399 |
tttaaggaaagcaaagcaataataaaaacagaggataccagataaattgcagcagaggggaggacactgcagagggagagtgagataaatacactgcaat |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
809337 |
tttaaggaaagcaaagcaataataaaaacagaggataccagaaaaattgcagcagaggggaggacactgcagagggagagtgagataaatacactgcaat |
809238 |
T |
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| Q |
499 |
aggtctgccattt |
511 |
Q |
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| T |
809237 |
aggtctgccattt |
809225 |
T |
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