View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10392_low_7 (Length: 455)
Name: NF10392_low_7
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 4791914 - 4792095
Alignment:
| Q |
13 |
agaagaaccctcacaaggaatagatgatgtcgcacgtcatgaatggaagtgtttcctataattgacagtttctaggatttgtttatatttaatattagga |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4791914 |
agaagaaccctcacaaggaa--gatgatgtcgcacgtcatgaatggaagtgtttcctataattgacagttactaggatttgtttatatttaatattagga |
4792011 |
T |
|
| Q |
113 |
ttcattactaattagaatgtaagttaggttattttgatgattattaatgttaatatatagatatatcatttggattattcgtat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4792012 |
ttcattactaattagaatgtaagttaggttattttgatgattattaatgttaatatatagatatatcatttggattattcgtat |
4792095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 4793074 - 4793200
Alignment:
| Q |
310 |
cctcgtggtccaactatataccataggaagcatgtaataatacatgaaaacaaatgtgaatgcaaccacgggcggcattgccgagatcggcaccggtgaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4793074 |
cctcgtggtccaactatataccataggaagcatgtaat---acatgaaaactaatgtgaatgcaaccacgggcggcattgccgagatcggcaccggtgaa |
4793170 |
T |
|
| Q |
410 |
tagagaaaacctgcgatttaattaagaaaa |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4793171 |
tagagaaaacctgcgatttaattaagaaaa |
4793200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 4792931 - 4793023
Alignment:
| Q |
220 |
caaataatttcctagtgtttgaatttcactgggaaatgaattgcagtcaacatgagtgctatgtagaaatagccaaagatcaacgcccctcct |
312 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4792931 |
caaatcatttcctagtgtttgaatttcactaggaaatgaattgcagtcaacatgagtgctatgtagaaatagccaaagatcaacgcccctcct |
4793023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 4788376 - 4788326
Alignment:
| Q |
106 |
attaggattcattactaattagaatgtaagttaggttattttgatgattat |
156 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
4788376 |
attaggattcattactaattaaaatgtaagttagggtattttgatgattat |
4788326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 4797416 - 4797474
Alignment:
| Q |
34 |
agatgatgtcgcacgtcatgaatggaagtgtttcctataattgacagtttctaggattt |
92 |
Q |
| |
|
|||||||||| || |||||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
4797416 |
agatgatgtcaaacatcatgaatggaaaggtatcctataattgacagttactaggattt |
4797474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University