View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10392_low_9 (Length: 402)
Name: NF10392_low_9
Description: NF10392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10392_low_9 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 402
Target Start/End: Original strand, 37800143 - 37800525
Alignment:
| Q |
9 |
agcagagagattcttaacagcgtgatgtagatcctcagtcaaaggattaggattcccaccaatagagaattttgtccttcttatcacttcaacatgctct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37800143 |
agcagagagattcttaacagcgtgatgtagatcctcagtcaaaggattaggattcccaccaatagagaattttgtccttcttatcacttcaacatgctct |
37800242 |
T |
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| Q |
109 |
tttggtgtagccattgatcttctctaactgaaatgaagtagaagtacgaacagtgaagaagaaaatgattactacacttcttgaaacgacacaaagaaca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37800243 |
tttggtgtagccattgatcttctctaactgaaatgaagta------cgagcagtgaagaagaaaatgattactacacttcttgaaacgacacaaagagca |
37800336 |
T |
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| Q |
209 |
cagtgaagactccttcttagagaagtaatttaataaagaggagttataaagttatttctttggaaaggaaaaggtataaagttggttattgcttattgga |
308 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37800337 |
cagtgaagactccttcttggagaagtaatttaataaagaggagttataaagttatttctttggaaaggaaaaggtataaagttggttattgcttattggt |
37800436 |
T |
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| Q |
309 |
tattaatgtgtacgttaaagaaagactgtctagtctagtgtgaggtgtgactgtgattgtccttccaattccaaatttcctttcgattttccaa |
402 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37800437 |
tattaatgtgtacgttaaagaaagact-----gtctagtgtgaggtgtgactgtgattgtccttccaattccaaatttcctttcgattttccaa |
37800525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 3008146 - 3008025
Alignment:
| Q |
10 |
gcagagagattcttaacagcgtgatgtagatcctcagtcaaaggattaggattcccaccaatagagaattttgtccttcttatcacttcaacatgctctt |
109 |
Q |
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| T |
3008146 |
gcagagagattcttgactgcatgatggagatcataagtcaatggattaggtttcccaccaatagaaaacttttctcttcgtatctcttcaatgtgttctt |
3008047 |
T |
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| Q |
110 |
ttggtgtagccattgatcttct |
131 |
Q |
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| |||||| ||||||||||||| |
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| T |
3008046 |
tcggtgtacccattgatcttct |
3008025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 2935362 - 2935449
Alignment:
| Q |
13 |
gagagattcttaacagcgtgatgtagatcctcagtcaaaggattaggattcccaccaatagagaattttgtccttcttatcacttcaa |
100 |
Q |
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| T |
2935362 |
gagagattcttgacagcttggtgaaggtcctcagtcaaagggtttggattgccaccaatggagaactttttccttcgtatctcttcaa |
2935449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 2925529 - 2925586
Alignment:
| Q |
14 |
agagattcttaacagcgtgatgtagatcctcagtcaaaggattaggattcccaccaat |
71 |
Q |
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||||||| || ||||| ||||| ||||| |||||||| |||||||| ||||||||||| |
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| T |
2925529 |
agagatttttgacagcatgatgaagatcttcagtcaatggattaggtttcccaccaat |
2925586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 28029392 - 28029608
Alignment:
| Q |
13 |
gagagattcttaacagcgtgatgtagatcctcagtcaaaggattaggattcccaccaatagagaattttgtccttcttatcacttcaacatgctcttttg |
112 |
Q |
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|||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| ||||||| || ||||||| |
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| T |
28029392 |
gagagattcttaacggcatgatgaagatcctcagtcaaaggattaggatttccaccaatagagaactttgtccttcgtatctcttcaacgtgttcttttg |
28029491 |
T |
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| Q |
113 |
gtgtagccattgatcttctctaactgaaatgaagtagaagtacgaacagtgaagaagaaaatgattactacacttcttgaaacgacacaaagaacacagt |
212 |
Q |
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||||||||||||||||||| |||||| ||||| |||||||| | |||||||||||| ||||||| ||||||||||| ||||||||| ||||||| |
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| T |
28029492 |
gtgtagccattgatcttctgtaactgtaatga---agaagtaccagcagtgaagaagagaatgatt----tacttcttgaaatgacacaaagcacacagt |
28029584 |
T |
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| Q |
213 |
gaagactccttcttagagaagtaa |
236 |
Q |
| |
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|||||||||||||| ||||||||| |
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| T |
28029585 |
gaagactccttcttggagaagtaa |
28029608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 28029606 - 28029669
Alignment:
| Q |
285 |
taaagttggttattgcttattggatattaatgtgtacgttaaagaaagactgtctagtctagtgt |
349 |
Q |
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| T |
28029606 |
taaagttggttattgcctattggttactgatgtgtacgttaaagaaaaactgtct-gtctagtgt |
28029669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 4911672 - 4911575
Alignment:
| Q |
9 |
agcagagagattcttaacagcgtgatgtagatcctcagtcaaaggattaggattcccaccaatagagaattttgtccttcttatcacttcaacatgct |
106 |
Q |
| |
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||||||||||||||||||||| ||||| ||||| ||| ||||||| || || ||||| ||||||||||||||| |||||| |||| |||||| ||||| |
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| T |
4911672 |
agcagagagattcttaacagcttgatgaagatcttcaatcaaagggtttggtttcccgccaatagagaattttctccttcgtatctcttcaatatgct |
4911575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 1502114 - 1502039
Alignment:
| Q |
13 |
gagagattcttaacagcgtgatgtagatcctcagtcaaaggattaggattcccaccaatagagaattttgtccttc |
88 |
Q |
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||||||||||| ||||| | ||| ||||||| ||||||| ||||||| | ||| ||||||||||| |||||||||| |
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| T |
1502114 |
gagagattcttgacagcattatgaagatcctgagtcaaaagattaggttcccctccaatagagaactttgtccttc |
1502039 |
T |
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