View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10393_high_1 (Length: 390)

Name: NF10393_high_1
Description: NF10393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10393_high_1
NF10393_high_1
[»] chr3 (20 HSPs)
chr3 (115-268)||(17574266-17574423)
chr3 (14-79)||(17574165-17574230)
chr3 (219-268)||(33491700-33491750)
chr3 (219-268)||(8851804-8851854)
chr3 (219-268)||(22316720-22316770)
chr3 (219-268)||(37513386-37513436)
chr3 (219-268)||(49621274-49621324)
chr3 (220-268)||(48434098-48434147)
chr3 (221-268)||(11121578-11121626)
chr3 (221-268)||(22975640-22975688)
chr3 (222-268)||(36229766-36229813)
chr3 (219-268)||(9296383-9296433)
chr3 (221-266)||(10687890-10687936)
chr3 (219-268)||(22317015-22317065)
chr3 (219-260)||(22975345-22975387)
chr3 (219-268)||(25847740-25847790)
chr3 (219-268)||(28830048-28830098)
chr3 (219-260)||(49711401-49711443)
chr3 (220-268)||(49711694-49711743)
chr3 (221-268)||(55009394-55009442)
[»] chr6 (11 HSPs)
chr6 (219-268)||(23068991-23069041)
chr6 (209-268)||(23068686-23068746)
chr6 (219-269)||(6755211-6755262)
chr6 (219-268)||(3218436-3218486)
chr6 (219-268)||(3922539-3922589)
chr6 (219-268)||(3922834-3922884)
chr6 (219-268)||(33595615-33595665)
chr6 (220-268)||(3218152-3218201)
chr6 (219-265)||(4243221-4243268)
chr6 (219-268)||(14763603-14763653)
chr6 (220-269)||(33595320-33595370)
[»] chr4 (34 HSPs)
chr4 (219-268)||(52690393-52690443)
chr4 (219-269)||(21707897-21707948)
chr4 (222-268)||(33369807-33369854)
chr4 (210-268)||(49621430-49621489)
chr4 (219-268)||(2685985-2686035)
chr4 (219-268)||(3546786-3546836)
chr4 (219-268)||(9525805-9525855)
chr4 (219-268)||(13294898-13294948)
chr4 (219-268)||(20930975-20931025)
chr4 (219-268)||(23163281-23163331)
chr4 (219-268)||(23163575-23163625)
chr4 (219-268)||(25297680-25297730)
chr4 (219-268)||(26202522-26202572)
chr4 (219-268)||(33369509-33369559)
chr4 (219-268)||(33692262-33692312)
chr4 (219-268)||(41689389-41689439)
chr4 (219-268)||(49621733-49621783)
chr4 (219-266)||(21053593-21053641)
chr4 (221-268)||(50161412-50161460)
chr4 (219-265)||(30055208-30055255)
chr4 (222-268)||(30799295-30799342)
chr4 (222-268)||(50161118-50161165)
chr4 (219-268)||(28458817-28458867)
chr4 (219-260)||(30055507-30055549)
chr4 (219-268)||(33692557-33692607)
chr4 (219-260)||(37872767-37872809)
chr4 (219-268)||(42856804-42856854)
chr4 (219-268)||(42857097-42857147)
chr4 (219-268)||(46143566-46143616)
chr4 (219-260)||(55742621-55742663)
chr4 (220-260)||(30799627-30799668)
chr4 (219-259)||(52690096-52690137)
chr4 (219-266)||(9526106-9526154)
chr4 (221-260)||(28458523-28458563)
[»] chr7 (19 HSPs)
chr7 (214-268)||(49114158-49114213)
chr7 (219-268)||(7417807-7417857)
chr7 (219-268)||(10878625-10878675)
chr7 (219-268)||(19305740-19305790)
chr7 (219-268)||(28408536-28408586)
chr7 (219-268)||(44307611-44307661)
chr7 (221-268)||(32523498-32523546)
chr7 (219-268)||(1511482-1511532)
chr7 (219-268)||(8437305-8437355)
chr7 (219-268)||(8437601-8437651)
chr7 (219-268)||(31894258-31894308)
chr7 (219-268)||(49113862-49113912)
chr7 (219-259)||(1511190-1511231)
chr7 (222-266)||(2933289-2933334)
chr7 (219-275)||(8114580-8114637)
chr7 (221-268)||(28408244-28408292)
chr7 (209-260)||(32177845-32177897)
chr7 (222-265)||(32178153-32178197)
chr7 (221-268)||(37453362-37453410)
[»] chr1 (16 HSPs)
chr1 (222-268)||(17985290-17985337)
chr1 (219-268)||(2026721-2026771)
chr1 (219-268)||(7113865-7113915)
chr1 (219-268)||(12139320-12139370)
chr1 (219-268)||(40902327-40902377)
chr1 (219-269)||(12139024-12139075)
chr1 (222-268)||(25780184-25780231)
chr1 (219-269)||(30563078-30563129)
chr1 (219-268)||(1549327-1549377)
chr1 (219-268)||(2027015-2027065)
chr1 (219-260)||(12115255-12115297)
chr1 (219-268)||(17611425-17611475)
chr1 (219-268)||(17611720-17611770)
chr1 (219-268)||(30562784-30562834)
chr1 (221-268)||(25779887-25779935)
chr1 (218-265)||(49564184-49564232)
[»] scaffold0347 (2 HSPs)
scaffold0347 (219-268)||(12229-12279)
scaffold0347 (219-269)||(11940-11991)
[»] chr8 (19 HSPs)
chr8 (219-268)||(2968165-2968215)
chr8 (219-268)||(14577161-14577211)
chr8 (219-268)||(17876065-17876115)
chr8 (219-268)||(20178371-20178421)
chr8 (219-268)||(20223099-20223149)
chr8 (219-268)||(27912393-27912443)
chr8 (219-268)||(27958812-27958862)
chr8 (219-268)||(30904655-30904705)
chr8 (219-268)||(30928608-30928658)
chr8 (219-268)||(35482702-35482752)
chr8 (219-268)||(35482997-35483047)
chr8 (221-268)||(17844176-17844224)
chr8 (213-268)||(44379516-44379572)
chr8 (219-269)||(10682061-10682112)
chr8 (222-268)||(17875771-17875818)
chr8 (219-268)||(3691582-3691632)
chr8 (219-268)||(30904361-30904411)
chr8 (219-266)||(13327262-13327310)
chr8 (221-260)||(30928315-30928355)
[»] chr5 (21 HSPs)
chr5 (219-268)||(13600741-13600791)
chr5 (219-268)||(15179085-15179135)
chr5 (219-268)||(18485659-18485709)
chr5 (219-268)||(19558168-19558218)
chr5 (219-268)||(30370511-30370561)
chr5 (219-268)||(32936206-32936256)
chr5 (219-268)||(32936501-32936551)
chr5 (219-268)||(32994450-32994500)
chr5 (219-268)||(35362213-35362263)
chr5 (219-268)||(35362984-35363034)
chr5 (219-268)||(35363285-35363335)
chr5 (219-268)||(37093739-37093789)
chr5 (219-268)||(40833936-40833986)
chr5 (219-268)||(40834231-40834281)
chr5 (202-266)||(2094870-2094935)
chr5 (219-268)||(7145533-7145583)
chr5 (219-268)||(20339156-20339206)
chr5 (219-268)||(20769712-20769762)
chr5 (219-268)||(30370806-30370856)
chr5 (219-260)||(32458090-32458132)
chr5 (221-260)||(20770016-20770056)
[»] chr2 (17 HSPs)
chr2 (219-268)||(2318785-2318835)
chr2 (219-268)||(9320098-9320148)
chr2 (219-268)||(10044745-10044795)
chr2 (219-268)||(10108813-10108863)
chr2 (219-268)||(18916625-18916675)
chr2 (214-269)||(18916919-18916975)
chr2 (219-265)||(601631-601678)
chr2 (222-268)||(5547346-5547393)
chr2 (219-268)||(4261451-4261501)
chr2 (219-260)||(17846008-17846050)
chr2 (219-268)||(17846303-17846353)
chr2 (219-268)||(20364266-20364316)
chr2 (219-260)||(27360425-27360467)
chr2 (219-268)||(10045043-10045092)
chr2 (219-259)||(27360119-27360160)
chr2 (222-266)||(44536482-44536527)
chr2 (221-268)||(9319804-9319852)
[»] scaffold0029 (1 HSPs)
scaffold0029 (219-260)||(136916-136958)
[»] scaffold0002 (1 HSPs)
scaffold0002 (219-260)||(330197-330239)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 115 - 268
Target Start/End: Original strand, 17574266 - 17574423
Alignment:
Q  115 caatatcttgaagtt---atagtggaggtaagtggaggaaaaaggtaagttccaatgatgtcattgtcatgttgtcattggtttcttgatatgattcatt 211  Q
    |||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17574266 caatatcttgaagttgttatagtggaggaaagtggaggaaaaaggtaagttccaatgatgtcattgtcatgttgtcattggtttcttcatatgattcatt 17574365  T
Q  212 tattaacggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    |||||| ||||||||||||||||| |||  ||||||| |||||||||||| |||||||    
T  17574366 tattaaaggcaaaattacacaattcgtccattaacttaattttaggtaacactttcgt 17574423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 17574165 - 17574230
Alignment:
Q  14 cataggctggtccatacactttcacaaccatgttttctgctcaaattcaagattcaagagtgtatc 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17574165 cataggctggtccatacactttcacaaccatgttttctgctcaaattcaagattcaagagtgtatc 17574230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 33491750 - 33491700
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  33491750 ggcaaaattacacaattagtctcttaactttattttaggtaacactttcgt 33491700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 8851804 - 8851854
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  8851804 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 8851854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 22316720 - 22316770
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  22316720 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 22316770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 37513436 - 37513386
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  37513436 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 37513386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 49621324 - 49621274
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  49621324 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 49621274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 48434147 - 48434098
Alignment:
Q  220 gcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  48434147 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 48434098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 11121626 - 11121578
Alignment:
Q  221 caaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  11121626 caaaattacacaattagtcccttaactttattttaggtaacactttcgt 11121578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 22975688 - 22975640
Alignment:
Q  221 caaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  22975688 caaaattacacaattagtcccttaactttattttaggtaacactttcgt 22975640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 36229766 - 36229813
Alignment:
Q  222 aaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||||    
T  36229766 aaaattacacaattagtcccttaactttattttaggtaacactttcgt 36229813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 9296383 - 9296433
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||| ||||||||||||| |||||| |||||||||||||| |||||||    
T  9296383 ggcaaaactacacaattagtcccttaactttattttaggtaacactttcgt 9296433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 10687936 - 10687890
Alignment:
Q  221 caaaattacacaattagtctcttaactt-attttaggtaactctttc 266  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||||    
T  10687936 caaaattacacaattcgtctcttaacttaattttaggtaacactttc 10687890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 22317065 - 22317015
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||| ||||||| |||||| |||||||||||||| |||||||    
T  22317065 ggcaaaattacacgattagtcccttaactttattttaggtaacactttcgt 22317015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 22975345 - 22975387
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaac 260  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  22975345 ggcaaaattacacaattagtcccttaactttattttaggtaac 22975387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 25847790 - 25847740
Alignment:
Q  219 ggcaaaattacacaattagtctcttaa-cttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||  |||||||||||||| |||||||    
T  25847790 ggcaaaattacacaattagtcccttaattttattttaggtaacactttcgt 25847740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 28830098 - 28830048
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| ||||||||| |||| |||||||    
T  28830098 ggcaaaattacacaattagtcccttaactttattttagctaacactttcgt 28830048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 49711401 - 49711443
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaac 260  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  49711401 ggcaaaattacacaattagtcccttaactttattttaggtaac 49711443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 49711743 - 49711694
Alignment:
Q  220 gcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||| |||||||| |||||| |||||||||||||| |||||||    
T  49711743 gcaaaattacataattagtcccttaactttattttaggtaacactttcgt 49711694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 55009442 - 55009394
Alignment:
Q  221 caaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||| |||||| |||||||| ||||| |||||||    
T  55009442 caaaattacacaattagtcccttaactttattttaagtaacactttcgt 55009394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 23069041 - 23068991
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  23069041 ggcaaaattacacaattagtctcttaactttattttaggtaacactttcgt 23068991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 23068686 - 23068746
Alignment:
Q  209 atttattaacggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||| || ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  23068686 atttataaaaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 23068746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 6755262 - 6755211
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgtt 269  Q
    ||||||||||||||||||||| |||||| |||||||||||||| ||||||||    
T  6755262 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgtt 6755211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 3218486 - 3218436
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  3218486 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 3218436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 3922539 - 3922589
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  3922539 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 3922589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 3922884 - 3922834
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  3922884 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 3922834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 33595665 - 33595615
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  33595665 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 33595615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 3218152 - 3218201
Alignment:
Q  220 gcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  3218152 gcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 3218201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 4243268 - 4243221
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactcttt 265  Q
    ||||||||||||||||||||| |||||| |||||||||||||| ||||    
T  4243268 ggcaaaattacacaattagtcccttaactttattttaggtaacacttt 4243221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 14763653 - 14763603
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||  |||||||    
T  14763653 ggcaaaattacacaattagtcccttaactttattttaggtaagactttcgt 14763603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 33595320 - 33595370
Alignment:
Q  220 gcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgtt 269  Q
    |||||||||||||||||||| |||||| ||||||||||||||  |||||||    
T  33595320 gcaaaattacacaattagtcccttaactttattttaggtaacattttcgtt 33595370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 52690443 - 52690393
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  52690443 ggcaaaattacacaattagtctcttaactttattttaggtaacactttcgt 52690393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 21707948 - 21707897
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgtt 269  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||||||    
T  21707948 ggcaaaattacacaattagtctcttaactttattttaggtaatactttcgtt 21707897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 33369854 - 33369807
Alignment:
Q  222 aaaattacacaattagtctcttaact-tattttaggtaactctttcgt 268  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||    
T  33369854 aaaattacacaattagtctcttaactatattttaggtaacactttcgt 33369807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 49621430 - 49621489
Alignment:
Q  210 tttattaacggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||| | ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  49621430 tttattcaaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 49621489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 2685985 - 2686035
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  2685985 ggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgt 2686035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 3546836 - 3546786
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||||| ||||||| |||||||||||||| |||||||    
T  3546836 ggcaaaattacacaattagtttcttaactttattttaggtaacactttcgt 3546786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 9525805 - 9525855
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  9525805 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 9525855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 13294948 - 13294898
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  13294948 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 13294898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 20930975 - 20931025
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  20930975 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 20931025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 23163281 - 23163331
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  23163281 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 23163331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 23163625 - 23163575
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  23163625 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 23163575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 25297680 - 25297730
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  25297680 ggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgt 25297730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 26202522 - 26202572
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  26202522 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 26202572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 33369509 - 33369559
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  33369509 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 33369559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 33692262 - 33692312
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  33692262 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 33692312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 41689389 - 41689439
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  41689389 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 41689439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 49621783 - 49621733
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  49621783 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 49621733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 21053641 - 21053593
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttc 266  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||    
T  21053641 ggcaaaattacacaattagtcccttaactttattttaggtaacactttc 21053593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 50161460 - 50161412
Alignment:
Q  221 caaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  50161460 caaaattacacaattagtcccttaactttattttaggtaacactttcgt 50161412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 30055208 - 30055255
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactcttt 265  Q
    ||||||||||||||||||||| |||||||| |||||||||||| ||||    
T  30055208 ggcaaaattacacaattagtcccttaacttaattttaggtaacacttt 30055255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 30799295 - 30799342
Alignment:
Q  222 aaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    |||||||||||||||||| |||||||| |||||||||||| |||||||    
T  30799295 aaaattacacaattagtcccttaacttaattttaggtaacactttcgt 30799342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 50161118 - 50161165
Alignment:
Q  222 aaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||||    
T  50161118 aaaattacacaattagtcccttaactttattttaggtaacactttcgt 50161165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 28458867 - 28458817
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||  |||||||    
T  28458867 ggcaaaattacacaattagtcccttaactttattttaggtaatactttcgt 28458817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 30055549 - 30055507
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaac 260  Q
    ||||||||||||||||||||| |||||||| ||||||||||||    
T  30055549 ggcaaaattacacaattagtcccttaacttaattttaggtaac 30055507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 33692607 - 33692557
Alignment:
Q  219 ggcaaaattacacaattagtctcttaa-cttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||  |||||||||||||| |||||||    
T  33692607 ggcaaaattacacaattagtcccttaattttattttaggtaacactttcgt 33692557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 37872767 - 37872809
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaac 260  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  37872767 ggcaaaattacacaattagtcccttaactttattttaggtaac 37872809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 42856804 - 42856854
Alignment:
Q  219 ggcaaaattacacaattagtctcttaa-cttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||  |||||||||||||| |||||||    
T  42856804 ggcaaaattacacaattagtcccttaattttattttaggtaacactttcgt 42856854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 42857147 - 42857097
Alignment:
Q  219 ggcaaaattacacaattagtctcttaa-cttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||  |||||||||||||| |||||||    
T  42857147 ggcaaaattacacaattagtcccttaattttattttaggtaacactttcgt 42857097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 46143616 - 46143566
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||  |||||| |||||||||||||| |||||||    
T  46143616 ggcaaaattacacaattagtgccttaactttattttaggtaacactttcgt 46143566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 55742621 - 55742663
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaac 260  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  55742621 ggcaaaattacacaattagtcccttaactttattttaggtaac 55742663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 30799668 - 30799627
Alignment:
Q  220 gcaaaattacacaattagtctcttaactt-attttaggtaac 260  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  30799668 gcaaaattacacaattagtcccttaacttaattttaggtaac 30799627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 52690096 - 52690137
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaa 259  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  52690096 ggcaaaattacacaattagtcgcttaactttattttaggtaa 52690137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 9526154 - 9526106
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttc 266  Q
    |||||||| |||||||||||| |||||| |||||||||||||| |||||    
T  9526154 ggcaaaataacacaattagtcccttaactttattttaggtaacactttc 9526106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 28458523 - 28458563
Alignment:
Q  221 caaaattacacaattagtctcttaac-ttattttaggtaac 260  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  28458523 caaaattacacaattagtcccttaacattattttaggtaac 28458563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 49114213 - 49114158
Alignment:
Q  214 ttaacggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  49114213 ttaaaggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 49114158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 7417857 - 7417807
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  7417857 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 7417807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 10878625 - 10878675
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  10878625 ggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgt 10878675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 19305740 - 19305790
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  19305740 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 19305790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 28408586 - 28408536
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  28408586 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 28408536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 44307611 - 44307661
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  44307611 ggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgt 44307661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 32523546 - 32523498
Alignment:
Q  221 caaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  32523546 caaaattacacaattagtcccttaactttattttaggtaacactttcgt 32523498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 1511532 - 1511482
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||||| | |||||||||| |||||||    
T  1511532 ggcaaaattacacaattagtcccttaacttaaatttaggtaacactttcgt 1511482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 8437305 - 8437355
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||| ||||| |||||||    
T  8437305 ggcaaaattacacaattagtcccttaactttattttatgtaacactttcgt 8437355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 8437651 - 8437601
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||| |||||||| |||||| |||||||||||||| |||||||    
T  8437651 ggcaaaattacataattagtcccttaactttattttaggtaacactttcgt 8437601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 31894258 - 31894308
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||| ||||| |||||||| |||||||||||| |||||||    
T  31894258 ggcaaaattacacaaatagtcccttaacttaattttaggtaacactttcgt 31894308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 49113862 - 49113912
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||||||  ||||| |||||||||||||| |||||||    
T  49113862 ggcaaaattacacaattagtcctttaactttattttaggtaacactttcgt 49113912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 1511190 - 1511231
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaa 259  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  1511190 ggcaaaattacacaattagtcccttaacttaattttaggtaa 1511231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 2933289 - 2933334
Alignment:
Q  222 aaaattacacaattagtctcttaac-ttattttaggtaactctttc 266  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||    
T  2933289 aaaattacacaattagtcccttaactttattttaggtaacactttc 2933334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 8114580 - 8114637
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactta-ttttaggtaactctttcgtttttatc 275  Q
    ||||||||||||||| |  || ||||||||| |||||||||||||||||||| |||||    
T  8114580 ggcaaaattacacaaattatcccttaacttaattttaggtaactctttcgttgttatc 8114637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 28408244 - 28408292
Alignment:
Q  221 caaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||| | |||||| |||||||||||||| |||||||    
T  28408244 caaaattacacaattagccccttaactttattttaggtaacactttcgt 28408292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 32177845 - 32177897
Alignment:
Q  209 atttattaacggcaaaattacacaattagtctcttaac-ttattttaggtaac 260  Q
    ||||||| | |||||||||||||||||||||  ||||| ||||||||||||||    
T  32177845 atttatttaaggcaaaattacacaattagtcctttaactttattttaggtaac 32177897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 32178197 - 32178153
Alignment:
Q  222 aaaattacacaattagtctcttaac-ttattttaggtaactcttt 265  Q
    |||||||||||||||||| |||||| |||||||||||||| ||||    
T  32178197 aaaattacacaattagtcccttaactttattttaggtaacacttt 32178153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 37453410 - 37453362
Alignment:
Q  221 caaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||| |||| |||||| |||||||||||||| |||||||    
T  37453410 caaaattacacaatcagtcccttaactttattttaggtaacactttcgt 37453362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 17985290 - 17985337
Alignment:
Q  222 aaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||    
T  17985290 aaaattacacaattagtctcttaactttattttaggtaacactttcgt 17985337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 2026721 - 2026771
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  2026721 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 2026771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 7113865 - 7113915
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  7113865 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 7113915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 12139370 - 12139320
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  12139370 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 12139320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 40902327 - 40902377
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  40902327 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 40902377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 12139024 - 12139075
Alignment:
Q  219 ggcaaaattacacaattagtctcttaa-cttattttaggtaactctttcgtt 269  Q
    |||||||||||||||||||||||||||  |||||||||||||  ||||||||    
T  12139024 ggcaaaattacacaattagtctcttaattttattttaggtaatactttcgtt 12139075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 25780231 - 25780184
Alignment:
Q  222 aaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||||    
T  25780231 aaaattacacaattagtcccttaactttattttaggtaacactttcgt 25780184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 30563129 - 30563078
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgtt 269  Q
    ||||||||||||| ||||||| |||||| |||||||||||||| ||||||||    
T  30563129 ggcaaaattacacgattagtcccttaactttattttaggtaacactttcgtt 30563078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 1549327 - 1549377
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||| |||||||||||| |||||| |||||||||||||| |||||||    
T  1549327 ggcaaaataacacaattagtcccttaactttattttaggtaacactttcgt 1549377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 2027065 - 2027015
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||| ||||| |||||||    
T  2027065 ggcaaaattacacaattagtcccttaactttattttatgtaacactttcgt 2027015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 12115297 - 12115255
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaac 260  Q
    ||||||||||||||||||||| |||||||| ||||||||||||    
T  12115297 ggcaaaattacacaattagtcccttaacttaattttaggtaac 12115255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 17611425 - 17611475
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||| ||||| |||||||    
T  17611425 ggcaaaattacacaattagtcccttaactttattttatgtaacactttcgt 17611475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 17611770 - 17611720
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||| |||||||| |||||| |||||||||||||| |||||||    
T  17611770 ggcaaaattacataattagtcccttaactttattttaggtaacactttcgt 17611720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 30562784 - 30562834
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||| |||||||||||| |||||| |||||||||||||| |||||||    
T  30562784 ggcaaaataacacaattagtcccttaactttattttaggtaacactttcgt 30562834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 25779887 - 25779935
Alignment:
Q  221 caaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||| |||||| ||||||||| |||| |||||||    
T  25779887 caaaattacacaattagtcccttaactttattttagataacactttcgt 25779935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 49564184 - 49564232
Alignment:
Q  218 cggcaaaattacacaattagtctcttaactt-attttaggtaactcttt 265  Q
    |||||||||||||||||| |||||||||||| |||| ||||||| ||||    
T  49564184 cggcaaaattacacaattcgtctcttaacttaatttcaggtaacacttt 49564232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 12279 - 12229
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  12279 ggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgt 12229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 11940 - 11991
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgtt 269  Q
    ||||||||||||||||||||| |||||||| ||||||||||||  |||||||    
T  11940 ggcaaaattacacaattagtcccttaacttaattttaggtaacattttcgtt 11991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 2968215 - 2968165
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  2968215 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 2968165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 14577211 - 14577161
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  14577211 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 14577161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 17876115 - 17876065
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  17876115 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 17876065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 20178371 - 20178421
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  20178371 ggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgt 20178421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 20223099 - 20223149
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  20223099 ggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgt 20223149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 27912443 - 27912393
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  27912443 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 27912393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 27958862 - 27958812
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  27958862 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 27958812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 30904705 - 30904655
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  30904705 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 30904655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 30928658 - 30928608
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  30928658 ggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgt 30928608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 35482702 - 35482752
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  35482702 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 35482752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 35483047 - 35482997
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  35483047 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 35482997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 17844224 - 17844176
Alignment:
Q  221 caaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  17844224 caaaattacacaattagtcccttaacttaattttaggtaacactttcgt 17844176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 44379516 - 44379572
Alignment:
Q  213 attaacggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||| |||||||||||||||||| || |||||||| |||||||||||| |||||||    
T  44379516 attaatggcaaaattacacaattaatcccttaacttaattttaggtaacactttcgt 44379572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 10682061 - 10682112
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgtt 269  Q
    |||||||||||||||||| || |||||| |||||||||||||| ||||||||    
T  10682061 ggcaaaattacacaattaatcccttaactttattttaggtaacactttcgtt 10682112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 17875771 - 17875818
Alignment:
Q  222 aaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||||    
T  17875771 aaaattacacaattagtcccttaactttattttaggtaacactttcgt 17875818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 3691582 - 3691632
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| | |||||||||||| |||||||    
T  3691582 ggcaaaattacacaattagtcccttaacataattttaggtaacactttcgt 3691632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 30904361 - 30904411
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||| || |||||| |||||||||||||| |||||||    
T  30904361 ggcaaaattacacaattaatcccttaactttattttaggtaacactttcgt 30904411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 13327262 - 13327310
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttc 266  Q
    ||||||||||||||||||||  |||||||| |||||||||||| |||||    
T  13327262 ggcaaaattacacaattagttccttaacttaattttaggtaacactttc 13327310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 30928315 - 30928355
Alignment:
Q  221 caaaattacacaattagtctcttaactt-attttaggtaac 260  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  30928315 caaaattacacaattagtcccttaacttaattttaggtaac 30928355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 13600791 - 13600741
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  13600791 ggcaaaattacacaattagtctcttaactttattgtaggtaacactttcgt 13600741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 15179135 - 15179085
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  15179135 ggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgt 15179085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 18485659 - 18485709
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  18485659 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 18485709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 19558218 - 19558168
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  19558218 ggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgt 19558168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 30370511 - 30370561
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  30370511 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 30370561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 32936206 - 32936256
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  32936206 ggcaaaattacacaattagtcacttaactttattttaggtaacactttcgt 32936256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 32936551 - 32936501
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  32936551 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 32936501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 32994500 - 32994450
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  32994500 ggcaaaattacacaattagtcccttaacttaattttaggtaacactttcgt 32994450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 35362263 - 35362213
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  35362263 ggcaaaattacacaattagtcccttaacttaattttaggtaacgctttcgt 35362213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 35362984 - 35363034
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  35362984 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 35363034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 35363335 - 35363285
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  35363335 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 35363285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 37093789 - 37093739
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  37093789 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 37093739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 40833936 - 40833986
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  40833936 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 40833986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 40834281 - 40834231
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  40834281 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 40834231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 2094935 - 2094870
Alignment:
Q  202 atgattcatttattaacggcaaaattacacaattagtctcttaac-ttattttaggtaactctttc 266  Q
    |||||| |||||||   ||||||||||||||||||||| |||||| |||||||||||||| |||||    
T  2094935 atgatttatttatttttggcaaaattacacaattagtcccttaactttattttaggtaacactttc 2094870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 7145533 - 7145583
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||| |||||||||||| |||||| |||||||||||||| |||||||    
T  7145533 ggcaaaataacacaattagtcccttaactttattttaggtaacactttcgt 7145583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 20339156 - 20339206
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||| || |||||| |||||||||||||| |||||||    
T  20339156 ggcaaaattacacaattaatcccttaactttattttaggtaacactttcgt 20339206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 20769712 - 20769762
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||  |||||||    
T  20769712 ggcaaaattacacaattagtcccttaactttattttaggtaatactttcgt 20769762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 30370856 - 30370806
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||| ||| |||||||    
T  30370856 ggcaaaattacacaattagtcccttaactttattttaggcaacactttcgt 30370806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 32458132 - 32458090
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaac 260  Q
    ||||||||||||||||||||| |||||||| ||||||||||||    
T  32458132 ggcaaaattacacaattagtcccttaacttaattttaggtaac 32458090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 20770056 - 20770016
Alignment:
Q  221 caaaattacacaattagtctcttaac-ttattttaggtaac 260  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  20770056 caaaattacacaattagtcccttaacattattttaggtaac 20770016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 2318835 - 2318785
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  2318835 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 2318785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 9320148 - 9320098
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  9320148 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 9320098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 10044745 - 10044795
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  10044745 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 10044795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 10108813 - 10108863
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  10108813 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 10108863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 18916625 - 18916675
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  18916625 ggcaaaattacacaattagtcccttaactttattttaggtaacactttcgt 18916675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 18916975 - 18916919
Alignment:
Q  214 ttaacggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgtt 269  Q
    |||| |||||||||||| |||||||| |||||| |||||||||||||| ||||||||    
T  18916975 ttaaaggcaaaattacataattagtcccttaactttattttaggtaacactttcgtt 18916919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 601678 - 601631
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactcttt 265  Q
    ||||||||||||||||||||| |||||| |||||||||||||| ||||    
T  601678 ggcaaaattacacaattagtcccttaactttattttaggtaacacttt 601631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 5547393 - 5547346
Alignment:
Q  222 aaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    |||||||||||||||||| |||||||| |||||||||||| |||||||    
T  5547393 aaaattacacaattagtcccttaacttaattttaggtaacactttcgt 5547346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 4261501 - 4261451
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||||||  ||||| |||||||||||||| |||||||    
T  4261501 ggcaaaattacacaattagtccgttaactttattttaggtaacactttcgt 4261451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 17846008 - 17846050
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaac 260  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  17846008 ggcaaaattacacaattagtcccttaactttattttaggtaac 17846050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 17846353 - 17846303
Alignment:
Q  219 ggcaaaattacacaattagtctcttaactt-attttaggtaactctttcgt 268  Q
    |||||||||| |||||||||| |||||||| |||||||||||| |||||||    
T  17846353 ggcaaaattatacaattagtcccttaactttattttaggtaacactttcgt 17846303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 20364316 - 20364266
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    |||||||||||||||||||||  ||||| |||||||||||||| |||||||    
T  20364316 ggcaaaattacacaattagtcctttaactttattttaggtaacactttcgt 20364266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 27360467 - 27360425
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaac 260  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  27360467 ggcaaaattacacaattagtcccttaactttattttaggtaac 27360425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 10045092 - 10045043
Alignment:
Q  219 ggcaaaattacacaattagtctcttaacttattttaggtaactctttcgt 268  Q
    ||||||||||| ||||||||| |||||||| |||||| |||| |||||||    
T  10045092 ggcaaaattacgcaattagtcccttaactttttttagttaacactttcgt 10045043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 27360119 - 27360160
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaa 259  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  27360119 ggcaaaattacacaattagtcccttaactttattttaggtaa 27360160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 44536527 - 44536482
Alignment:
Q  222 aaaattacacaattagtctcttaac-ttattttaggtaactctttc 266  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||    
T  44536527 aaaattacacaattagtcccttaactttattttaggtaacactttc 44536482  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 9319804 - 9319852
Alignment:
Q  221 caaaattacacaattagtctcttaac-ttattttaggtaactctttcgt 268  Q
    ||||| ||||||||||||| |||||| |||||||||||||| |||||||    
T  9319804 caaaactacacaattagtcccttaactttattttaggtaacactttcgt 9319852  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 136916 - 136958
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaac 260  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  136916 ggcaaaattacacaattagtcccttaactttattttaggtaac 136958  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 330197 - 330239
Alignment:
Q  219 ggcaaaattacacaattagtctcttaac-ttattttaggtaac 260  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  330197 ggcaaaattacacaattagtcccttaactttattttaggtaac 330239  T

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