View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10393_high_9 (Length: 241)

Name: NF10393_high_9
Description: NF10393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10393_high_9
NF10393_high_9
[»] chr1 (2 HSPs)
chr1 (1-223)||(11206471-11206693)
chr1 (1-208)||(11200734-11200949)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11206471 - 11206693
Alignment:
Q  1 atgaagtaattctgaaaagtatgtttattagctatatgttggttgtaaaatcaataaataagtgcttggtatttaacccaaaaacaagtagcatgaatat 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11206471 atgaagtaattctgaaaagtatgcttattagctatatgttggttgtaaaatcaataaataagtgcttggtatttaacccaaaaacaagtagcatgaatat 11206570  T
Q  101 gacattttatatgctgaaaatgttacttgttccatcatttcattattaaagttatagttctttgaactcttattacactaatagcatgcatatctatagt 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11206571 gacattttttatgctgaaaatgttacttgttccatcatttcattattaaagttatagttctttgaactcttattacactaatagcatgcatatctatagt 11206670  T
Q  201 ttgtctttagtaaatgtatgata 223  Q
    |||||||||||||||||||||||    
T  11206671 ttgtctttagtaaatgtatgata 11206693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 11200734 - 11200949
Alignment:
Q  1 atgaagtaattctgaaaagtatgtttattagctatatgttggttgtaaaatcaataaataagtg-cttggtatttaacccaaaaacaagtagcatgaata 99  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||    
T  11200734 atgaagtaattctgaaaagtatgcttattagctgtatgttggttgtaaaatcaataaataagtgccttgatatttaacccaaaaacatgtagcatgaata 11200833  T
Q  100 tgacattttatatgctgaaaatgttac---ttgttccatcatttcatt----attaaagttatagttctttgaactcttattacactaatagcatgcata 192  Q
    ||||||||| |||||||||||||||||   ||||| | |||||||| |    || ||||||||| |||||| |||||||||||||||||| |||||||||    
T  11200834 tgacattttttatgctgaaaatgttactttttgtttcctcatttcactatcaatcaaagttataattctttcaactcttattacactaatggcatgcata 11200933  T
Q  193 tctatagtttgtcttt 208  Q
    |||||  |||||||||    
T  11200934 tctatcctttgtcttt 11200949  T

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