View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10393_low_1 (Length: 469)
Name: NF10393_low_1
Description: NF10393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10393_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 41166912 - 41166609
Alignment:
| Q |
17 |
acatacaaaacagagcaaaaaacagagtttctcacctgagaattcatccaagacaaggaaaggatcaaagtacttgagctcaaatctaaacaaacccaga |
116 |
Q |
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| T |
41166912 |
acatacaaaacagagcaaaaaacagagtttctcacctgagaattcatccaagacaaggaaaggatcaaagtacttgagctcaaatctaaacaaacccaga |
41166813 |
T |
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| Q |
117 |
tgatgaagaaaaccaatcaattcaaaaggatcaaatccaaaacatttaatgcagtttatatgtaaatttaacacctttgcctcaatgttcatgattgaaa |
216 |
Q |
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| T |
41166812 |
tgatgaagaaaaccaatcaattcaaaaggatcaaatccaaaacatttaatgcagtttatatgtaaatttaacacctttgcctcaatgttcatgattgaaa |
41166713 |
T |
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| Q |
217 |
g-nnnnnnnnnctatacaagatttttaaaatttatttattttcatttacgtgacacactcctatagtatatataaaaagtatgaacgtattaagtcacgt |
315 |
Q |
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| T |
41166712 |
gaaaaaaaaaactatacaagatttttaaaatttatttattttcatttacgtgacacactcctatagtatatataaaaagtatgaacgtattaagtcacgt |
41166613 |
T |
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| Q |
316 |
tttg |
319 |
Q |
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|||| |
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| T |
41166612 |
tttg |
41166609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 422 - 464
Target Start/End: Complemental strand, 41166509 - 41166467
Alignment:
| Q |
422 |
tttgttggactgcactttgaattaattaccttcctatgcttct |
464 |
Q |
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| T |
41166509 |
tttgttggactgaactttgaattaattaccttcctatgcttct |
41166467 |
T |
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