View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10393_low_12 (Length: 231)
Name: NF10393_low_12
Description: NF10393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10393_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 36463412 - 36463215
Alignment:
| Q |
17 |
gaagtggtgaagtgtgaaatatggtttttgggattgtgagttagtattattctcttgaagagaaggaagaggaagataatagcaaagaaaatgtagtaga |
116 |
Q |
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| T |
36463412 |
gaagtggtgaaatatgaaatatggtttttgggattgtgagttagtattattctcttgaagagaaggaagaggaagataatagcaaagaaaatgaagtaga |
36463313 |
T |
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| Q |
117 |
acaacatagctaagaattgagttgtgaggatataggttgagttttagagcaacatggcaggtgtgtatatatatgtgcaggaaatgaaatgatcctta |
214 |
Q |
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| T |
36463312 |
acaacatagctaagaattgagttgtgaggatataggttgagttttagagcaatatagcaggtgtgtatatatatgtgcaggaaatgaaatgatcctta |
36463215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 36661902 - 36661796
Alignment:
| Q |
105 |
aaatgtagtagaacaacatagctaagaattgagttgtgaggatataggttgagttttagagcaacatg-gcaggtgtgtatatatatgtgcaggaaatga |
203 |
Q |
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|||||||||||||||| ||||||| |||||||| || |||||||||| ||||||| ||||||| ||| ||||||||||||||||| |||||||||| | |
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| T |
36661902 |
aaatgtagtagaacaatatagctaggaattgagatgcaaggatataggctgagtttgagagcaatatgtgcaggtgtgtatatata--tgcaggaaatta |
36661805 |
T |
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| Q |
204 |
aatgatcct |
212 |
Q |
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| T |
36661804 |
aatgatcct |
36661796 |
T |
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