View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10393_low_3 (Length: 365)

Name: NF10393_low_3
Description: NF10393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10393_low_3
NF10393_low_3
[»] scaffold0020 (1 HSPs)
scaffold0020 (10-353)||(158748-159091)


Alignment Details
Target: scaffold0020 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 159091 - 158748
Alignment:
Q  10 agaacctgtgaaatagtcacacaacagaaatgatgagggaattgtttttggttaggaaacaaatgctgagatagggttagaagtgtcaaaaatatcattt 109  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  159091 agaacctgtgaaatagtcacacaacagaaacgatgagggagttgtttttggttaggaaacaaatgctgagatagggttagaagtgtcaaaaatatcattt 158992  T
Q  110 aggatatgcgatctggtcagattatgttgcagaaatatgatcgggaatgtctagacttccggaaaagcgtagaattgtgtaatcctattatatgattctc 209  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  158991 aggatatgcgatctggtcagattgtgttccagaaatatgatcgggaatgtctagacttccggaaaagcgtagaattatgtaatcctattatatgattctc 158892  T
Q  210 gaagcacaattattttcctaatatatgattcttgatgttgtctgatcctaaatgcaaatggaaataagattgatgtggattactgcagggaatgtggatt 309  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  158891 gaagcacaattattttcctaatatatgattcttgatgttgtcggatcctaaatgcaaatggaaataagattgatgtggattactgcagggaatatggatt 158792  T
Q  310 gcattctcctacgacctcatccaatgagatcgacttctgtgctg 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  158791 gcattctcctacgacctcatccaatgagatcgacttctgtgctg 158748  T

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