View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10393_low_4 (Length: 319)
Name: NF10393_low_4
Description: NF10393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10393_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 39076591 - 39076302
Alignment:
| Q |
18 |
cgtttaacatcaaatcaccactggatctccaattccaattcttccattgactttgtcctgcattctcgcgctttgtcacctgaaataagacagttgtaaa |
117 |
Q |
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| T |
39076591 |
cgtttaacatcaaatcaccactggatctccaattccaattcttccattgactttgtcctgcattctcgcgctttgtcacctgaaataagacagttgtaaa |
39076492 |
T |
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| Q |
118 |
atgatcattagtgatactgttatnnnnnnnngttattagccgatttatagtaggattgaattaggtcgaacccgaattctaaaatagcactagtatgcaa |
217 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39076491 |
atgatcattggtgatactgttataaaaaaaagttattagccgatttatagtaggattgaattaggtcgaactcgaattctaaaatagcactagtatgcaa |
39076392 |
T |
|
| Q |
218 |
taatgagttnnnnnnnnnnnnnnttatctttgttcatggatctaacctctttgaaggtattgtcattggaagcaagaaatctattgcctt |
307 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39076391 |
taatgagttaaaaatgaaaaaaattatctttgttcatggatctaacctctttgaaggtattgtcattggaagcaagaaatctattgcctt |
39076302 |
T |
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