View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10393_low_5 (Length: 316)
Name: NF10393_low_5
Description: NF10393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10393_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 11206191 - 11205883
Alignment:
| Q |
1 |
aggtttcctcatttcatttgtcccaaatgaaattaatttatcattaggaatgaaatactgggacatcatgagagactgtataaaaacctt-agagcaagc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11206191 |
aggtttcctcatttcatttgtcccaaatgaaattaatttatcattaggaatgaaatactgggacatcatgagagactgtataaaaacctttagagcaagc |
11206092 |
T |
|
| Q |
100 |
cgcttacaaaaaattacaaattccagaaaaaagagtactaaacatatgttagttatttaactgagctgacctaatggaagatcattgcttccttcaacta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11206091 |
cgcttacaaaaaattacaaattccagaaaaaagagtactaaacatatgttagttatttaactgagctgacctaatggaagatcattgcttccttcaacta |
11205992 |
T |
|
| Q |
200 |
aaaatggaattggcttcttcggggcaggcagccgtccaatgctatcaactttatctttttgctttggaggaggtctagctgctttaggcaacaatcttcc |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11205991 |
aaaatggaattggcttcttcggggcaggcagccgtccaatgctatcaactttatctttttgctttggaggaggtctagctgctttaggcaacaatcttcc |
11205892 |
T |
|
| Q |
300 |
tttcttctc |
308 |
Q |
| |
|
||||||||| |
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|
| T |
11205891 |
tttcttctc |
11205883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 4 - 308
Target Start/End: Complemental strand, 38182596 - 38182291
Alignment:
| Q |
4 |
tttcctcatttcatttgtcccaaatgaaattaatttatc-attaggaatgaaatactgggacatcatgagagactgtataaaaacctt-agagcaagccg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||| |||||| ||||||||||||||| ||||||| ||| |
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|
| T |
38182596 |
tttcctcatttcatttgtcccaaatgaaattaatttatctattaggaatgaactaccgagacatcgtgagagcctgtataaaaacctttagagcaaaccg |
38182497 |
T |
|
| Q |
102 |
cttacaaaaaattacaaattccag-aaaaaagagtactaaacatatgttagttatttaactgagctgacctaatggaagatcattgcttccttcaactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| |
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| T |
38182496 |
cttacaaaaaattacaaattccagcaaaaaagagtactaaacat--gttagttatttaactgagctgacctactggaagatctttgattccttcaactaa |
38182399 |
T |
|
| Q |
201 |
aaatggaattggcttcttcggggcaggcagccgtccaatgctatcaactttatctttttgctttggaggaggtctagctgctttaggcaacaatcttcct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38182398 |
aaatggaattggcttcttcggggcaggcagccgtccaatactatcaactctatccttttgctttggaggaggtctagctgctttaggcaacaatcttcct |
38182299 |
T |
|
| Q |
301 |
ttcttctc |
308 |
Q |
| |
|
|||||||| |
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|
| T |
38182298 |
ttcttctc |
38182291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 4 - 308
Target Start/End: Complemental strand, 49010032 - 49009728
Alignment:
| Q |
4 |
tttcctcatttcatttgtcccaaatgaaattaatttatc-attaggaatgaaatactgggacatcatgagagactgtataaaaacctt-agagcaagccg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| || ||||| |||||||||||||||| || |||| ||| |
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|
| T |
49010032 |
tttcctcatttcatttgtcccaaatgaaattaatttatctattaggaatgaactaccgggatattgtgagaaactgtataaaaacctttagggcaaaccg |
49009933 |
T |
|
| Q |
102 |
cttacaaaaaattacaaattccagaaaaaagagtactaaacatatgttagttatttaactgagctgacctaatggaagatcattgcttccttcaactaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||||||||| |
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|
| T |
49009932 |
cttacaaaaaattacaaattccagaaaaaagagtactaaacat--gttagttatttaactgagctgacctactagaagatccttgcttccttcaactaaa |
49009835 |
T |
|
| Q |
202 |
aatggaattggcttcttcggggcaggcagccgtccaatgctatcaactttatctttttgctttggaggaggtctagctgctttaggcaacaatcttcctt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49009834 |
aatggaattggcttcttcggggcaggcagtcgtccaatgctatcaactttatccttttgctttggaggaggtctagctgctttaggcaacaatcttcctt |
49009735 |
T |
|
| Q |
302 |
tcttctc |
308 |
Q |
| |
|
||||||| |
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|
| T |
49009734 |
tcttctc |
49009728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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