View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10394_low_1 (Length: 395)
Name: NF10394_low_1
Description: NF10394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10394_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 133 - 378
Target Start/End: Complemental strand, 33681509 - 33681260
Alignment:
| Q |
133 |
gtgatctccattaacatttccaatgataaagtaatccaggaaacaaattttactattgaagtaattgcaaaaacaaaatatagaaaatagaatatctt-- |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33681509 |
gtgatctccattaacatttccaatgataaagtaatccaggaaacaaattttactattgaagtaattgcaaaaacaaaatatagaaaatagaatatcttaa |
33681410 |
T |
|
| Q |
231 |
--tacccggtgcaccaaacagtttgatcgaaggatgtctacgcaaaatattgtgaaccggagatgtaataaccaatgcaccagaaggtggaactgaaagc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33681409 |
tttacccggtgcaccaaacagtttgatcgaaggatgtctacgcaaaatattgtgaaccggagatgtaataaccaatgcaccagaaggtggaactgagagc |
33681310 |
T |
|
| Q |
329 |
aacaacctactcaatttctttgcaaatgaggcagcaaggtaagctgggag |
378 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33681309 |
aacagcctactcaatttctttgcaaatgaggcagcaaggtaagctgggag |
33681260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 157 - 375
Target Start/End: Complemental strand, 33666878 - 33666661
Alignment:
| Q |
157 |
gataaagtaatccaggaaacaaattttactattgaagtaattgcaaaaacaaaatatagaaaatagaatatctttacccggtgcaccaaacagtttgatc |
256 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| | ||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
33666878 |
gatatagtaatccaggaaacaaaatttactaatgaagtgattgcaaaaacaaaatatagacacaagactatctttacccgatgcaccaaacagtt-gatc |
33666780 |
T |
|
| Q |
257 |
gaaggatgtctacgcaaaatattgtgaaccggagatgtaataaccaatgcaccagaaggtggaactgaaagcaacaacctactcaatttctttgcaaatg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33666779 |
gaaggatgtctacgcaaaatattgtgaaccagagatgtaataaccaatgcaccagaaggtggaactgaaagcaacagcctactcaatttctttgcaaatg |
33666680 |
T |
|
| Q |
357 |
aggcagcaaggtaagctgg |
375 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
33666679 |
aggcagccaggtaagctgg |
33666661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 33681660 - 33681571
Alignment:
| Q |
47 |
aaactgcaataattctaaatataagatgaattgaaaagtatttcctcaacacaacatatatcattttctaaatggaaaagtttatagtga |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33681660 |
aaactgcaataattctaaatataagatgaattgaaaagtatttcctcaacacaacatatatcattttctaaatggaaaagtttatagtga |
33681571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 33667029 - 33666966
Alignment:
| Q |
67 |
ataagatgaattgaaaagtatttcctcaacacaacatatatcattttctaaatggaaaagttta |
130 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
33667029 |
ataagatgaatagaaaagtatttcctgaacacagcatagatcattttctaaatggaaaagttta |
33666966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33681749 - 33681703
Alignment:
| Q |
1 |
tggaaacaattcaaaatacacaaacacgcaagtatgcaactatttaa |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33681749 |
tggaaacaattcaaaatacacaaacacgcaagtatgcaactatttaa |
33681703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University