View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10394_low_11 (Length: 242)
Name: NF10394_low_11
Description: NF10394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10394_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49121212 - 49121434
Alignment:
| Q |
1 |
acttttatttttgttgaaatttactacagtgaataaaagtcacttcaattgtttattacagtactgaacacaaactttttgagattgaattcctggataa |
100 |
Q |
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| T |
49121212 |
acttttatttttgttgaaatttactacagtgaataaaagtcacttcaattgtttattacagtactgaacacaaactttttgagattgaattcctggataa |
49121311 |
T |
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| Q |
101 |
caaacctggtataagtgcttgagatccattgtattctttatgactggatccacaatgtttggaagtttggacctgtctgtgagctgaggcatggcctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49121312 |
caaacctggtataagtgcttgagatccattgtattctttatgactggatccacaatgtttggaagtttggacctgtctgtgagctgaggcatggcctgca |
49121411 |
T |
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| Q |
201 |
ttcataaatagttatgttatcct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
49121412 |
ttcataaatagttatgttatcct |
49121434 |
T |
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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 4273431 - 4273333
Alignment:
| Q |
102 |
aaacctggtataagtgcttgagatccattgtattctttatgactggatccacaatgtttggaagtttggacctgtctgtgagctgaggcatggcctgca |
200 |
Q |
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| T |
4273431 |
aaacctggtataagtgcttaggatccattgtattcttaatcacattatccacaatgtttggaagcttggatctgtctgtgagctgtggcatggcctgca |
4273333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 2809527 - 2809429
Alignment:
| Q |
102 |
aaacctggtataagtgcttgagatccattgtattctttatgactggatccacaatgtttggaagtttggacctgtctgtgagctgaggcatggcctgca |
200 |
Q |
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| T |
2809527 |
aaacctggtataagtgcttaggatccattgtattcttaatcacattatccacaatgtttggaagcttggatctgtctgtgagctgtggcatggcctgca |
2809429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 40044227 - 40044279
Alignment:
| Q |
67 |
aacacaaactttttgagattgaattcctggataacaaacctggtataagtgct |
119 |
Q |
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||||||||||||||| |||| |||||||||||||||||| |||||||| |||| |
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| T |
40044227 |
aacacaaactttttgcgattcaattcctggataacaaacatggtataaatgct |
40044279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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