View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10394_low_12 (Length: 242)
Name: NF10394_low_12
Description: NF10394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10394_low_12 |
 | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 16874491 - 16874699
Alignment:
| Q |
15 |
aaggaggaggcactcatcacgacataactaatcactttctcttcatcgtatgaatctgagtgtagatcagctcgcaaaatttttcgacctctctctttct |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16874491 |
aaggaggaggcactcatcacgacatacctaatcactttctcttcatcgtatgaatctgagtgtagatcagctcgcaaattttttcgacctctctctttct |
16874590 |
T |
|
| Q |
115 |
catgttcatacttcatagtattgtcagtaggagtgtgatgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16874591 |
catgttcatacttcatagtattgtcagtaggagtgtgatgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgtt |
16874690 |
T |
|
| Q |
215 |
gaactctct |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
16874691 |
gaactctct |
16874699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 16580630 - 16580838
Alignment:
| Q |
15 |
aaggaggaggcactcatcacgacataactaatcactttctcttcatcgtatgaatctgagtgtagatcagctcgcaaaatttttcgacctctctctttct |
114 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||| |||||||||||| |
|
|
| T |
16580630 |
aaggaggaggcactcatcaggacatacctaatcactttctcttcatcgtatgaatctgagtgtgggtcagctcacaaattttttcgatctctctctttct |
16580729 |
T |
|
| Q |
115 |
catgttcatacttcatagtattgtcagtaggagtgtgatgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgtt |
214 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16580730 |
cgtgttcatacttcatagtattgtcagtaggagtgtgatgaattacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgtt |
16580829 |
T |
|
| Q |
215 |
gaactctct |
223 |
Q |
| |
|
|||| |||| |
|
|
| T |
16580830 |
gaaccctct |
16580838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 16614750 - 16614542
Alignment:
| Q |
15 |
aaggaggaggcactcatcacgacataactaatcactttctcttcatcgtatgaatctgagtgtagatcagctcgcaaaatttttcgacctctctctttct |
114 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||| |||||||||||| |
|
|
| T |
16614750 |
aaggaggaggcactcatcaggacatacctaatcactttctcttcatcgtatgaatctgagtgtgggtcagctcacaaattttttcgatctctctctttct |
16614651 |
T |
|
| Q |
115 |
catgttcatacttcatagtattgtcagtaggagtgtgatgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgtt |
214 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16614650 |
cgtgttcatacttcatagtattgtcagtaggagtgtgatgaattacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgtt |
16614551 |
T |
|
| Q |
215 |
gaactctct |
223 |
Q |
| |
|
|||| |||| |
|
|
| T |
16614550 |
gaaccctct |
16614542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 16572611 - 16572817
Alignment:
| Q |
15 |
aaggaggaggcactcatcacgacataactaatcactttctcttcatcgtatgaatctgagtgtagatcagctcgcaaaatttttcgacctctctctttct |
114 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |||||| |||||| |
|
|
| T |
16572611 |
aaggaggaggcactcatcaggacatacctaatcactttctcttcatcgtatgaatctgagtgtggatcagcttgcaaattttttcaacctct--ctttct |
16572708 |
T |
|
| Q |
115 |
catgttcatacttcatagtattgtcagtaggagtgtgatgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgtt |
214 |
Q |
| |
|
| ||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16572709 |
cgtgttcatacttaatagtattgtcagtaggaatgtgatgaatgacgagcataatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgtt |
16572808 |
T |
|
| Q |
215 |
gaactctct |
223 |
Q |
| |
|
|||| |||| |
|
|
| T |
16572809 |
gaaccctct |
16572817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 233548 - 233370
Alignment:
| Q |
35 |
gacataactaatcactttctcttcatcgtatgaatct--gagtgtagatcagctcgcaaaatttttcgacctctctctttctcatgttcatacttcatag |
132 |
Q |
| |
|
|||||| ||| | |||||||||||||| ||||| ||| |||||| ||||||||| |||| |||||||| ||||||||| ||| |||||||| | |
|
|
| T |
233548 |
gacatacctatttactttctcttcatcatatgattctttgagtgtggatcagctcacaaattttttcgatctctctcttcctcgtgttcata-------g |
233456 |
T |
|
| Q |
133 |
tattgtcagtaggagtgtgatgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaac |
218 |
Q |
| |
|
|||||||||||||| |||| ||||| |||| ||||||||| |||||||||||| ||||||||||| | ||| |||||||||||| |
|
|
| T |
233455 |
tattgtcagtaggatgatgatcaatgaggagcttcatgcaagctgggatcagccaactgggtgcattattttcagaaatgttgaac |
233370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 21629402 - 21629580
Alignment:
| Q |
35 |
gacataactaatcactttctcttcatcgtatgaatct--gagtgtagatcagctcgcaaaatttttcgacctctctctttctcatgttcatacttcatag |
132 |
Q |
| |
|
|||||| ||||| || ||||||||||| ||||||||| ||| | ||||||||||||||| |||||||||||||||| | | ||| |||||| |
|
|
| T |
21629402 |
gacatacctaattaccttctcttcatcatatgaatctttgagcatggatcagctcgcaaaaaatttcgacctctctcttccccg----cat---tcatag |
21629494 |
T |
|
| Q |
133 |
tattgtcagtaggagtgtgatgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaac |
218 |
Q |
| |
|
||||||| || |||||||||||||| |||| |||||| | |||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
21629495 |
aattgtcactaagagtgtgatgaatggcgagcttcatgctggctgggatcaaccatctgggtgcattgtattccgaaatgttgaac |
21629580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 222
Target Start/End: Complemental strand, 48298648 - 48298482
Alignment:
| Q |
51 |
ttctcttcatcgtatgaatct--gagtgtagatcagctcgcaaaatttttcgacctctctctttctcatgttcatacttcatagtattgtcagtaggagt |
148 |
Q |
| |
|
||||||||||| ||||| ||| ||| || ||||||||| |||| |||||||| ||||||||| ||| || ||||| ||||||||||||||| |
|
|
| T |
48298648 |
ttctcttcatcatatgattctttgagcgtggatcagctcacaaattttttcgatctctctcttcctcgtgctcata-------gtattgtcagtaggatg |
48298556 |
T |
|
| Q |
149 |
gtgatgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaactctc |
222 |
Q |
| |
|
|||| ||||| |||| ||||||||| |||||||||||| ||||||||||| | ||| |||||||||||||||| |
|
|
| T |
48298555 |
atgatcaatgaggagcttcatgcaagctgggatcagccaactgggtgcattattttcagaaatgttgaactctc |
48298482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 7392033 - 7392125
Alignment:
| Q |
126 |
ttcatagtattgtcagtaggagtgtgatgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaac |
218 |
Q |
| |
|
||||||||||||||||||||| || | ||||| |||| ||||||||| |||||||| ||| ||||||||||| | |||||||||||||||| |
|
|
| T |
7392033 |
ttcatagtattgtcagtaggatgatggtcaatgaggagcttcatgcaagctgggatcaaccaactgggtgcattattttccgaaatgttgaac |
7392125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 10963 - 10897
Alignment:
| Q |
152 |
atgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaac |
218 |
Q |
| |
|
||||||||||||| ||||| || ||||| || |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
10963 |
atgaatgatgagcttcatgtcagctgggaccaaccatctggatgcattgtgttccaaaatgttgaac |
10897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University