View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10394_low_13 (Length: 240)
Name: NF10394_low_13
Description: NF10394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10394_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 20529532 - 20529745
Alignment:
| Q |
1 |
tacctaccaaaacagaagtgcaacacatttattttaatctacaattttcatttggagtcgaataaatgttgtgttcatgaaaaaataaatgggtgtggac |
100 |
Q |
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| T |
20529532 |
tacctaccaaaacagaagtgcaacacatttattttaatctacaattttcatttggagtcgaataaatgttgtgttcatgaaaaaataaatgggtgtggac |
20529631 |
T |
|
| Q |
101 |
tgtggagtacccatacgtaagaccaacaaatctannnnnnngagggatagaccaacaaatctattggtaattgtaataatagaacatgtgaatctcaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20529632 |
tgtggagtacccatacgtaagaccaacaaatctatttttttgagggatagaccaacaaatctattggtaattgtaataatagaacatgtgaatctcacgc |
20529731 |
T |
|
| Q |
201 |
tttcactccaattt |
214 |
Q |
| |
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|||||||||||||| |
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| T |
20529732 |
tttcactccaattt |
20529745 |
T |
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