View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10394_low_2 (Length: 384)

Name: NF10394_low_2
Description: NF10394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10394_low_2
NF10394_low_2
[»] chr8 (1 HSPs)
chr8 (90-384)||(41640865-41641145)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 90 - 384
Target Start/End: Complemental strand, 41641145 - 41640865
Alignment:
Q  90 tgagtttgtaccatttttaacaaaaaagttgaattttacaatagtaaagtaatgagaagaaatataacgttttatgtatgcaaaatctaacttatcattg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41641145 tgagtttgtaccatttttaacaaaaaagttgaattttacaatagtaaagtaatgagaagaaatataacgtttcatgtatgcaaaatctaacttatcattg 41641046  T
Q  190 tgtttgtgtatggatgtatttaggtttatttagagttttgatccctcttggtttcactcatttatgaaattggcctcctcatttaaaaatcactcgattt 289  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||              |||||||||||||||||||||||||||||||||    
T  41641045 tgtttgtgtatgaatgtatttaggtttatttagagttttgatccctcttgttt--------------aattggcctcctcatttaaaaatcactcgattt 41640960  T
Q  290 tagaacctttatttctcatannnnnnnactaaagaatgatgatgcgacgtattttaaacgatacgatttgatgatgtgaaatgatcaacaactat 384  Q
    |||||||||||||| |||||       | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  41640959 tagaacctttatttttcatatttttttagtaaagaatgattatgcgacgtattttaaacgatacgatttgatgatgagaaatgatcaataactat 41640865  T

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