View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10394_low_4 (Length: 305)
Name: NF10394_low_4
Description: NF10394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10394_low_4 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 34826607 - 34826894
Alignment:
| Q |
1 |
aacaaggaaattgggagcagctatcattaaaataacaaatcaagttgaatgaattttcaccgcg----tagaagctacaagtaccagcttctatgtgaat |
96 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
34826607 |
aacaaggaaattgggagcagctatcattaaaataacaaatcaagttgaatgaattttcaccgcgaccgtagaagctataagtaccagcttctatgtgaat |
34826706 |
T |
|
| Q |
97 |
cgattttgagggctagaatcaattcaaaaaatgattagccaaacactttatattttaacaaactcacgtttactttttcaaactcaagtttgatgtttgc |
196 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826707 |
cgattttgagggctagaatcaattcaaaaaatgattagccaaacactttatattttaataaactcacgtttactttttcaaactcaagtttgatgtttgc |
34826806 |
T |
|
| Q |
197 |
aaacgcacaaccaaacgagtgcggagtagaggcgcatatgtgggccacgtgtggatgagatactttattggatttgagcattactttt |
284 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34826807 |
aaacgcacaaccaaacgagttcggagtagaggcgcatatgtgggccacgtgtggatgagatactttattggatttgagtattactttt |
34826894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 26 - 214
Target Start/End: Original strand, 2695559 - 2695752
Alignment:
| Q |
26 |
attaaaataacaaatcaagttgaatgaattttcaccg----cgtagaagctacaagtaccagcttctatgtgaatcgattttgagggctagaatcaattc |
121 |
Q |
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||||||||||||||||||||| | |||||||| |||| |||||||||||||||||| |||||| |||| || |||||||||||| ||||||||||| |
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| T |
2695559 |
attaaaataacaaatcaagttaagtgaatttttaccgtgatcgtagaagctacaagtactagcttccatgtaaagcgattttgagggttagaatcaattt |
2695658 |
T |
|
| Q |
122 |
aaaaaatgattagccaaacactttatattttaacaaactcacgtttactttttcaaactcaagtttgatgtttgcaaacgc-acaaccaaacga |
214 |
Q |
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|||||||||||| ||||||||||| | ||||||||||||| | |||| |||||||| ||| |||||| |||||||||||| |||||||||||| |
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| T |
2695659 |
aaaaaatgattacccaaacacttttttttttaacaaactcgcttttatcttttcaaattcacgtttgaggtttgcaaacgcaacaaccaaacga |
2695752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 138741 - 138953
Alignment:
| Q |
8 |
aaattgggagcagctatcattaaaataacaaatcaagttgaatgaattttcaccgcg----tagaagctacaagtaccagcttctatgtgaatcgatttt |
103 |
Q |
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||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| | |||||||||||||||| |||||| ||||||||| ||||| |
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| T |
138741 |
aaattgggagcagctattattaaaataacaaattaagttggatgaattttcaccgtgaccatagaagctacaagtactagcttccatgtgaatcaatttt |
138840 |
T |
|
| Q |
104 |
gagggctagaatcaattcaaaaaatgattagccaaacactttatattttaacaaactcacgtttactttttcaaactcaagtttgatgtttgcaaacgca |
203 |
Q |
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|
||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||| |
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| T |
138841 |
gagggctagaatcaatttaaaaaatgattatccaaacactttattttttaacaaactcgcttttactttttcaaactcaagtttgaggtttggaaacgca |
138940 |
T |
|
| Q |
204 |
caaccaaacgagt |
216 |
Q |
| |
|
||||||||||||| |
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| T |
138941 |
caaccaaacgagt |
138953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 49177846 - 49177630
Alignment:
| Q |
8 |
aaattgggagcagctatcattaaaataacaaatcaagttgaatgaattttcaccg----cgtagaagctacaagtaccagcttctatgtgaatcgatttt |
103 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||| |||||| ||||| |||| || ||||||| |
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| T |
49177846 |
aaattgggagcagctattattaaaataacaaatcaagttaagtgaattttcaccgtgaccgtagaagctataagtactggcttccatgtaaagcgatttt |
49177747 |
T |
|
| Q |
104 |
gagggctagaatcaattcaaaaaatgattagccaaacactttatatttt--aacaaactcacgtttactttttcaaactcaagtttgatgtttgcaaacg |
201 |
Q |
| |
|
||||||| ||||||||| |||| ||||||| | ||||||||| | |||| ||||||||||| ||||| |||||||||||| |||||| ||||||||||| |
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| T |
49177746 |
gagggctggaatcaatttaaaacatgattacctaaacacttttttttttttaacaaactcacttttaccttttcaaactcacgtttgaggtttgcaaacg |
49177647 |
T |
|
| Q |
202 |
cacaaccaaacgagtgc |
218 |
Q |
| |
|
||||||||||||||||| |
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| T |
49177646 |
cacaaccaaacgagtgc |
49177630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 25060838 - 25060763
Alignment:
| Q |
92 |
tgaatcgattttgagggctagaatcaattcaaaaaatgattagccaaacactttatattttaacaaactcacgttt |
167 |
Q |
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|||||| ||||||| |||||||||||||| ||||| || ||| ||||||||||||| ||||||||||||||||||| |
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| T |
25060838 |
tgaatcaattttgaaggctagaatcaatttaaaaattggttatccaaacactttattttttaacaaactcacgttt |
25060763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 1765693 - 1765549
Alignment:
| Q |
74 |
caagtaccagcttctatgtgaatcgattttgagggctagaatcaattcaaaaaatgattagccaaacactt-tatattttaacaaactcacgtttacttt |
172 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||| |||| ||||||| |||| |||||||||| ||| |||||||| ||||| |||||| || |
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| T |
1765693 |
caagtaccagcttccatgtcaatcgattttgagggctagaattaatttaaaaaataattacccaaacacttgtattttttaacatactcatgtttacctt |
1765594 |
T |
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| Q |
173 |
ttcaaactcaagtttgatgtttgcaaacgcacaaccaaacgagtg |
217 |
Q |
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|||||||||| | ||| |||| ||||||| |||||||| ||||| |
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| T |
1765593 |
ttcaaactcacatatgaggtttacaaacgcccaaccaaaagagtg |
1765549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 28752069 - 28751905
Alignment:
| Q |
14 |
ggagcagctatcattaaaataacaaatcaagttgaatgaattttcaccg----cgtagaagctacaagtaccagcttctatgtgaatcgattttgagggc |
109 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| ||||| ||||| || ||||||||||||| | |||| | |||||||||||||||||||| |
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|
| T |
28752069 |
ggagcagctattattaaaataacaaatcaaattgaattaatttccaccgtgaccgcagaagctacaagttctagctaccatgtgaatcgattttgagggt |
28751970 |
T |
|
| Q |
110 |
tagaatcaattcaaaaaatgattagccaaacac-tttatattttaacaaactcacgtttactttt |
173 |
Q |
| |
|
|| |||||||| ||||||| ||| |||||||| ||||| || ||| |||||||||||||||||| |
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| T |
28751969 |
tataatcaatttgaaaaatggttacccaaacacttttattttctaataaactcacgtttactttt |
28751905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 32737043 - 32737136
Alignment:
| Q |
74 |
caagtaccagcttctatgtgaatcgattttgagggctagaatcaattcaaaaaatgattagccaaacactttatattttaacaaactcacgttt |
167 |
Q |
| |
|
||||||| |||||| |||| || ||||||||||||||| |||||||| ||||||||| || ||||||||||| | ||||||||||||||||||| |
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|
| T |
32737043 |
caagtactagcttccatgtaaagcgattttgagggctaaaatcaatttaaaaaatgagtacccaaacacttttttttttaacaaactcacgttt |
32737136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 32737124 - 32737167
Alignment:
| Q |
175 |
caaactcaagtttgatgtttgcaaacgcacaaccaaacgagtgc |
218 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
32737124 |
caaactcacgtttgaggtttgcaaacgcacaaccaaacgagtgc |
32737167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 32736630 - 32736680
Alignment:
| Q |
8 |
aaattgggagcagctatcattaaaataacaaatcaagttgaatgaattttc |
58 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||| |||| ||||||||| |
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|
| T |
32736630 |
aaattgggcgcagctattattaaaataacaaatcaaattgagtgaattttc |
32736680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 41457721 - 41457598
Alignment:
| Q |
1 |
aacaaggaaattgggagcagctatcattaaaataacaaatcaagttgaatgaattt------tcaccgcgtagaagctacaagtaccagcttctatgtga |
94 |
Q |
| |
|
|||| ||| ||||||||||| ||| ||||||||||| ||||||||||||| ||||| | ||||| ||||||||||||||| |||||| |||||| |
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| T |
41457721 |
aacatggatattgggagcagttattattaaaataactaatcaagttgaattaatttccggtgtgaccgc--agaagctacaagtactagcttccatgtga |
41457624 |
T |
|
| Q |
95 |
atcgattttgagggctagaatcaatt |
120 |
Q |
| |
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||| ||||| | ||||| |||||||| |
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|
| T |
41457623 |
atcaattttaaaggctataatcaatt |
41457598 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 41454211 - 41454115
Alignment:
| Q |
123 |
aaaaatgattagccaaacactt-tatattttaacaaactcacgtttactttttcaaactcaagtttgatgtttgcaaacgcacaaccaaacgagtgc |
218 |
Q |
| |
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||||||| ||| |||||||||| ||| |||||| |||||||||||||| | | ||||||| |||||| |||| || || |||||| ||||||||| |
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| T |
41454211 |
aaaaatggttacccaaacacttgtattttttaataaactcacgtttaccatgttaaactcacgtttgaggtttctaatcgtacaacctaacgagtgc |
41454115 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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