View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10394_low_5 (Length: 290)

Name: NF10394_low_5
Description: NF10394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10394_low_5
NF10394_low_5
[»] chr6 (2 HSPs)
chr6 (147-275)||(29645741-29645869)
chr6 (11-80)||(29645602-29645671)
[»] chr8 (9 HSPs)
chr8 (214-269)||(28731606-28731661)
chr8 (214-269)||(28626001-28626056)
chr8 (214-269)||(28701015-28701070)
chr8 (190-269)||(28711917-28711996)
chr8 (190-269)||(28719264-28719343)
chr8 (190-269)||(28726906-28726985)
chr8 (176-269)||(28636761-28636854)
chr8 (214-269)||(28644495-28644550)
chr8 (214-263)||(28740551-28740600)
[»] scaffold0591 (1 HSPs)
scaffold0591 (214-269)||(5228-5283)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 147 - 275
Target Start/End: Original strand, 29645741 - 29645869
Alignment:
Q  147 cttcatgtatgcaatgcagcttgcaatttctattgcacttcccatggcactccaatgttcaattgatcttggtgtttttgaagtgttgcaaaaagctggt 246  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  29645741 cttcatgtatgcaatgcagattgcaatttctattgcacttcccatggcactccaatgtgcaattgatcttggtgtttttgaagtgttgcaaaaagccggt 29645840  T
Q  247 aaaggtgctcaactctcggccgacgacat 275  Q
    |||||||||||||||||||||||||||||    
T  29645841 aaaggtgctcaactctcggccgacgacat 29645869  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 29645602 - 29645671
Alignment:
Q  11 catagggagataggaatatacacattcaagtcaatatggccagccttttaaattcaaagaatctcaattg 80  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  29645602 catagggagataggaatatacacaatcaagtcgatatggccagccttttaaattcaaagaatctcaattg 29645671  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 28731661 - 28731606
Alignment:
Q  214 cttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccga 269  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  28731661 cttggtgtttttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgccga 28731606  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 28626056 - 28626001
Alignment:
Q  214 cttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccga 269  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  28626056 cttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgccga 28626001  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 28701070 - 28701015
Alignment:
Q  214 cttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccga 269  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  28701070 cttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgccga 28701015  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 28711996 - 28711917
Alignment:
Q  190 atggcactccaatgttcaattgatcttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccga 269  Q
    ||||||||||| | | ||| ||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  28711996 atggcactccattctgcaactgagcttggtgtatttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgccga 28711917  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 28719343 - 28719264
Alignment:
Q  190 atggcactccaatgttcaattgatcttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccga 269  Q
    ||||||||||| | | ||| ||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  28719343 atggcactccattctgcaactgagcttggtgtatttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgccga 28719264  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 28726985 - 28726906
Alignment:
Q  190 atggcactccaatgttcaattgatcttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccga 269  Q
    ||||||||||| | | ||| ||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  28726985 atggcactccattctgcaactgagcttggtgtatttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgccga 28726906  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 269
Target Start/End: Complemental strand, 28636854 - 28636761
Alignment:
Q  176 ctattgcacttcccatggcactccaatgttcaattgatcttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccga 269  Q
    |||||||  |||| |||||||| |||| | ||| ||| |||||||||||||| || |||||||||||||| |||| |||||||||||| |||||    
T  28636854 ctattgcgtttccaatggcactacaatctgcaactgagcttggtgtttttgatgttttgcaaaaagctggaaaagatgctcaactctctgccga 28636761  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 28644550 - 28644495
Alignment:
Q  214 cttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccga 269  Q
    |||||||| ||||| |||||||||||| |||||||||||||||||||||| |||||    
T  28644550 cttggtgtatttgatgtgttgcaaaaaactggtaaaggtgctcaactctctgccga 28644495  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 28740600 - 28740551
Alignment:
Q  214 cttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctc 263  Q
    |||||||| ||||| |||||||||||||||||||||| ||||||||||||    
T  28740600 cttggtgtatttgatgtgttgcaaaaagctggtaaagatgctcaactctc 28740551  T

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Target: scaffold0591 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 5228 - 5283
Alignment:
Q  214 cttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccga 269  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  5228 cttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgccga 5283  T

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