View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10394_low_6 (Length: 274)
Name: NF10394_low_6
Description: NF10394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10394_low_6 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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| [»] scaffold0807 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 20528918 - 20529186
Alignment:
| Q |
6 |
agagatgaagtctccaaaaatggtattcaaaatcagaagtatcatattttgatttcaaccaccaataagtttgaagcttaatcttctcgcataatgcgtg |
105 |
Q |
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| T |
20528918 |
agagatgaagtctccaaaaatggtattcaaaatcagaagtatcatattttgatttcaaccaccaataagtttgaagcttaatcttctcgcataatgcgtg |
20529017 |
T |
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| Q |
106 |
taaagtttcctccttatggtgaaaaatatgatgattgcacttttttcaaattatccataccgtagaaatccaaacaatattcaacagcatacgacaccta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20529018 |
taaagtttcctccttatggtgaaaaatatgatgattgcgcttttttcaaattatccataccgtagaaatccaaacaatattcaacagcatatgacaccta |
20529117 |
T |
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| Q |
206 |
ttcgcaaaaccacctaaagcaccaaattgcatctgaggctcatcaaatagatgcgtcgcactaatacca |
274 |
Q |
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| T |
20529118 |
ttcgcaaaaccacccaaagcaccaaattgcatctgaggctcatcaaataaatgtgtcccactaatacca |
20529186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 60757 - 60684
Alignment:
| Q |
20 |
caaaaatggtattcaaaatcagaagtatcatattttgatttcaaccaccaataagtttgaagcttaatcttctc |
93 |
Q |
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| T |
60757 |
caaaactggtactcaaaattaaaagtagcttattttgatttcaaccaccaataaatttgaagcttgatcttctc |
60684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 189
Target Start/End: Complemental strand, 55713372 - 55713215
Alignment:
| Q |
32 |
tcaaaatcagaagtatcatattttgatttcaaccaccaataagtttgaagcttaatcttctcgcataatgcgtgtaaagtttcctccttatggtgaaaaa |
131 |
Q |
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| T |
55713372 |
tcaaaatcaaatgtaacgtattttaatttcagccaccaataagactgcagcttaatcttctcgcataaagtttgcaagttttcgtccttatgttgaaaaa |
55713273 |
T |
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| Q |
132 |
tatgatgattgcacttttttcaaattatccataccgtagaaatccaaacaatattcaa |
189 |
Q |
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| T |
55713272 |
tatgatcactgtgttcattacaaattatccaaaccgtagaaagccagataatattcaa |
55713215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 16181404 - 16181436
Alignment:
| Q |
58 |
tttcaaccaccaataagtttgaagcttaatctt |
90 |
Q |
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| T |
16181404 |
tttcaaccaccaataagtttgaagcttaatctt |
16181436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 19016006 - 19016060
Alignment:
| Q |
13 |
aagtctccaaaaatggtattcaaaatcagaagtatcatattttgatttcaaccac |
67 |
Q |
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| T |
19016006 |
aagtcttcaaaaatggtaatcgaaatcaaaagtaatatattttgatttcaaccac |
19016060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 25587004 - 25587053
Alignment:
| Q |
32 |
tcaaaatcagaagtatcatattttgatttcaaccaccaataagtttgaag |
81 |
Q |
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| T |
25587004 |
tcaaaatcaaaagtagcatgttttgatttcaaccaccaatatatttgaag |
25587053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 1506945 - 1507027
Alignment:
| Q |
51 |
attttgatttcaaccaccaataagtttgaagcttaatcttctcgcataatgcgtgtaaagtttcctccttatggtgaaaaata |
133 |
Q |
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| T |
1506945 |
attttgatttcaattaccaataagactgaagcttaattttctcatataaagtttgtaaattttcctccttattctgaaaaata |
1507027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 32152947 - 32153001
Alignment:
| Q |
24 |
aatggtattcaaaatcagaagtatcatattttgatttcaaccaccaataagtttg |
78 |
Q |
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| T |
32152947 |
aatggtattcaaaaacaaaagtagcgtattttgctttcaaccacaaataagtttg |
32153001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0807
Description:
Target: scaffold0807; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 81
Target Start/End: Original strand, 4949 - 4978
Alignment:
| Q |
52 |
ttttgatttcaaccaccaataagtttgaag |
81 |
Q |
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| T |
4949 |
ttttgatttcaaccaccaataagtttgaag |
4978 |
T |
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