View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10394_low_7 (Length: 252)
Name: NF10394_low_7
Description: NF10394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10394_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 34892802 - 34892966
Alignment:
| Q |
16 |
aaatatattaattcttgagatgccactttgtcgaaccaacctctcaatctgctaatcgnnnnnnnnnnnnnnnnnnn---tgaataaaaaggaaatttgc |
112 |
Q |
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| T |
34892802 |
aaatatattaattcttgagatgccactttgtcgaaccaacctctcaatctgctaatcgaaaaaaggtaaaaaaaaaaaaatgaataaataggaaatttgc |
34892901 |
T |
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| Q |
113 |
ttttaataaattttgatctaaacacaagcttgttgtcattataccaacaatttcttacattgctc |
177 |
Q |
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| T |
34892902 |
ttttaataaattttgatctaaacacaagcttgttgtcattataccaacaatttcttacattgctc |
34892966 |
T |
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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 34893894 - 34893936
Alignment:
| Q |
105 |
aaatttgcttttaataaattttgatctaaacacaagcttgttg |
147 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
34893894 |
aaatctgcttttaataaattttgatgtaaacacaagcttgttg |
34893936 |
T |
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