View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10394_low_9 (Length: 250)
Name: NF10394_low_9
Description: NF10394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10394_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 49121232 - 49120992
Alignment:
| Q |
1 |
aatttcaacaaaaataaaagtgctataagaaacaattgaaatgaattttatttacaaatttctcgctaaaattaaatgctagcatgttcaaaactattaa |
100 |
Q |
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| T |
49121232 |
aatttcaacaaaaataaaagtgctataagaaacaattgaaatgaattttatttacaaatttctcgctaaaattaaatgctagcatgttcaaaactattaa |
49121133 |
T |
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| Q |
101 |
aatccagtttgtgaacttaaccccactttgtatatcagtaatgtaaatccagttttgtatcttgcttgtaggttgctgcggtagctgtgctatgtgtgca |
200 |
Q |
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| T |
49121132 |
aatccagtttgtgaacttaaccccactttgtatatcagtaatgtaaatccagttttgtatcttgcttgtaggttgctgcggtagctgtgctatgtgtgca |
49121033 |
T |
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| Q |
201 |
accagagccaagttaccggccactaatcacagatgttcttc |
241 |
Q |
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| T |
49121032 |
accagagccaagttaccggccactaatcacagatgttcttc |
49120992 |
T |
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Back To:
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 45166163 - 45166232
Alignment:
| Q |
170 |
aggttgctgcggtagctgtgctatgtgtgcaaccagagccaagttaccggccactaatcacagatgttct |
239 |
Q |
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| T |
45166163 |
aggtagctgcagtggctgtgctatgtgtgcaagctgaaccaagttataggccacttataacagatgttct |
45166232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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