View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10395_high_4 (Length: 296)

Name: NF10395_high_4
Description: NF10395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10395_high_4
NF10395_high_4
[»] chr7 (3 HSPs)
chr7 (23-284)||(3752738-3752999)
chr7 (71-284)||(4047239-4047452)
chr7 (122-243)||(9664309-9664430)
[»] chr6 (11 HSPs)
chr6 (80-251)||(6466373-6466544)
chr6 (113-261)||(6458406-6458554)
chr6 (110-251)||(6506526-6506667)
chr6 (131-270)||(6529220-6529359)
chr6 (131-251)||(6472058-6472178)
chr6 (147-251)||(6519604-6519708)
chr6 (114-243)||(6497721-6497850)
chr6 (149-239)||(6460857-6460947)
chr6 (131-239)||(6515107-6515215)
chr6 (149-243)||(7204144-7204239)
chr6 (149-243)||(7238895-7238990)
[»] chr4 (1 HSPs)
chr4 (122-243)||(13535333-13535454)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 3752738 - 3752999
Alignment:
Q  23 aacaacaacactctcatccaccaaaacacaataacaatgtcttcatcatcttctgttcctttcctatttcctcaaactcattcaacagtcctcccaaacc 122  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3752738 aacaacatcactctcatccaccaaaacacaataacaatgtcttcatcatcttctcttcctttcctatttcctcaaactcattcaacagtcctcccaaacc 3752837  T
Q  123 cttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3752838 cttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacat 3752937  T
Q  223 tcacccttacctcatcaaatcctcaaacttttccctctctatttcctaccctcttcttctct 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3752938 tcacccttacctcatcaaatcctcaaacttttccctctctatttcctaccctcttctcctct 3752999  T

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Target: chr7; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 71 - 284
Target Start/End: Complemental strand, 4047452 - 4047239
Alignment:
Q  71 tcttctgttcctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaa 170  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  4047452 tcttctgttcctttcctatttcctcaaactcattcaactgtccttccaaacccttcaaatttcttctcacaaaacttactatccacacctctccctacaa 4047353  T
Q  171 actctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctcaaacttttccctctctatttccta 270  Q
    |||| ||||||||||| |||||||| || ||||||||   || |||||||||||||||||||||  ||||||||||||||| |||||| ||| |||| ||    
T  4047352 actcattcttccaaaattttgttctacaaaatggtgatcaacatgaatacattcacccttaccttgtcaaatcctcaaactcttccctatctgtttcata 4047253  T
Q  271 ccctcttcttctct 284  Q
    ||||||||| ||||    
T  4047252 ccctcttctcctct 4047239  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 9664309 - 9664430
Alignment:
Q  122 ccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaataca 221  Q
    ||||| || |||||||| | ||| || ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||  |  ||||||||    
T  9664309 ccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaataca 9664408  T
Q  222 ttcacccttacctcatcaaatc 243  Q
    |||||||||| ||| |||||||    
T  9664409 ttcacccttatctcgtcaaatc 9664430  T

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Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 80 - 251
Target Start/End: Complemental strand, 6466544 - 6466373
Alignment:
Q  80 cctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttct 179  Q
    ||||||||||| || || |||||||| || ||||||||  ||||  ||||||||||||| | ||| || ||||||||||||||||| |||||||||||||    
T  6466544 cctttcctattcccacagactcattccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttct 6466445  T
Q  180 tccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctcaaact 251  Q
    ||||||||||||||||| | |||||||||  ||||||||||||||| || || ||||||||||| |||||||    
T  6466444 tccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaact 6466373  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 6458554 - 6458406
Alignment:
Q  113 ctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacac 212  Q
    |||||| ||||||||||||||||||| |  || || || ||  | || ||||| |||||||||||||||||||| |||||||| || |||||||||||||    
T  6458554 ctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacac 6458455  T
Q  213 ctgaatacattcacccttacctcatcaaatcctcaaacttttccctctc 261  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  6458454 ctgagtacattcacccttacctcatcaaatcctcaaacttctccctctc 6458406  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 6506667 - 6506526
Alignment:
Q  110 gtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgaca 209  Q
    ||||||||  |||| || || |||||||| | ||| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||      
T  6506667 gtcctccctgacccctccaaattcttctctccaaatctgctatccacacccctgcctacaaactctttcttccaaaactttgttctcaacaatggtgatg 6506568  T
Q  210 cacctgaatacattcacccttacctcatcaaatcctcaaact 251  Q
    ||||||||||| |||| ||||||||||||||||| |||||||    
T  6506567 cacctgaatactttcatccttacctcatcaaatcatcaaact 6506526  T

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Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 131 - 270
Target Start/End: Complemental strand, 6529359 - 6529220
Alignment:
Q  131 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 230  Q
    |||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||| || |    
T  6529359 ttcttctctccaaatctgctatccacacccctccctacaaactctttcttccaaaactttgttctcaacaatggtgaccaacctgaatacattcatccat 6529260  T
Q  231 acctcatcaaatcctcaaacttttccctctctatttccta 270  Q
    | ||||||||||| ||| |||  || || |||||||||||    
T  6529259 atctcatcaaatcttcagactcatcactttctatttccta 6529220  T

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Target: chr6; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 131 - 251
Target Start/End: Original strand, 6472058 - 6472178
Alignment:
Q  131 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 230  Q
    |||||||||| |||  | ||||||||||||||||||||||||||||||||||||||| |||| ||  | |||||||||  ||||||||||||||| ||||    
T  6472058 ttcttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaacattgtcctaaaaaatggtgaccaacctgaatacattcatcctt 6472157  T
Q  231 acctcatcaaatcctcaaact 251  Q
    ||||||||||||| |||||||    
T  6472158 acctcatcaaatcatcaaact 6472178  T

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Target: chr6; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 6519604 - 6519708
Alignment:
Q  147 tactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctc 246  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||  ||||||||| ||||| || |||||||| ||||| ||    
T  6519604 tactatccaaacccctccctacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatatattcatccatacctcattaaatcatc 6519703  T
Q  247 aaact 251  Q
    |||||    
T  6519704 aaact 6519708  T

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Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 6497850 - 6497721
Alignment:
Q  114 tcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacc 213  Q
    ||||| |||| || || ||||||||  |||| || ||||| | ||||||||| |||||||||||||||||||||||||||||| |||| ||||||  |||    
T  6497850 tcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacc 6497751  T
Q  214 tgaatacattcacccttacctcatcaaatc 243  Q
    ||||||  |||| |||||||||||||||||    
T  6497750 tgaatattttcatccttacctcatcaaatc 6497721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 6460857 - 6460947
Alignment:
Q  149 ctatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatca 239  Q
    ||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||||  ||| |||||| |||| |||||||||||||    
T  6460857 ctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatca 6460947  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 239
Target Start/End: Original strand, 6515107 - 6515215
Alignment:
Q  131 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 230  Q
    |||||||| | ||| || ||||| ||||||||||| ||||||||||||||||||||||||  ||||    | ||||| |||||||||||||| || ||||    
T  6515107 ttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacctgaatacatccatcctt 6515206  T
Q  231 acctcatca 239  Q
    |||||||||    
T  6515207 acctcatca 6515215  T

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Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 7204144 - 7204239
Alignment:
Q  149 ctatccacacccc-tccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatc 243  Q
    ||||||||||||| |||| || |  ||||||||||||||||||||||||  ||||||||||  ||||||||||||||| || |||||||| |||||    
T  7204144 ctatccacaccccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatc 7204239  T

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Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 7238895 - 7238990
Alignment:
Q  149 ctatccacacccc-tccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatc 243  Q
    ||||||||||||| |||| || |  ||||||||||||||||||||||||  ||||||||||  ||||||||||||||| || |||||||| |||||    
T  7238895 ctatccacaccccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatc 7238990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 13535333 - 13535454
Alignment:
Q  122 ccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaataca 221  Q
    ||||| || |||||||| | ||| || ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||  |  ||||||||    
T  13535333 ccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaataca 13535432  T
Q  222 ttcacccttacctcatcaaatc 243  Q
    |||||||||| ||| |||||||    
T  13535433 ttcacccttatctcgtcaaatc 13535454  T

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