View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10395_low_10 (Length: 261)
Name: NF10395_low_10
Description: NF10395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10395_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 63 - 251
Target Start/End: Original strand, 3753264 - 3753452
Alignment:
| Q |
63 |
ccaaatatacccttcaactcaataacaatcagacatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatcc |
162 |
Q |
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| T |
3753264 |
ccaaacatacccttcaacttaataacactcagaaatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatcc |
3753363 |
T |
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| Q |
163 |
atttaccggtataatccgtatcatagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgttaccctatctctg |
251 |
Q |
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| T |
3753364 |
attttccggtataatccgtatcatagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgttaccctgtctctg |
3753452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 4047036 - 4046786
Alignment:
| Q |
1 |
acctctttcaatcacaacaattcatagtataatttctttgtctccatttgataagnnnnnnnccaaatatacccttcaactcaataacaatcagacatgg |
100 |
Q |
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| T |
4047036 |
acctctttcaatcacaacaattcatagtataatttctttgtctccatttgataagaaaaaaaccaaatatacccttcaactcaataacaatcagacatgg |
4046937 |
T |
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| Q |
101 |
atcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatccatttaccggtataatccgtatcatagtcattcctaata |
200 |
Q |
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| T |
4046936 |
atcatatacacttcttcaccaatcaacttcaaccatgatggttccgaggttaaatccggtccattttccggtattattcgtatcgcggttgttcctgatt |
4046837 |
T |
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| Q |
201 |
ccaaatttgagaaaattcttgataaattcagctcttgttaccctatctctg |
251 |
Q |
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| T |
4046836 |
ccaatggtgagaaaattcttgataaatttagctcttgttaccctatctctg |
4046786 |
T |
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