View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10395_low_11 (Length: 250)

Name: NF10395_low_11
Description: NF10395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10395_low_11
NF10395_low_11
[»] chr1 (6 HSPs)
chr1 (1-186)||(36779771-36779957)
chr1 (1-52)||(2223377-2223428)
chr1 (187-235)||(36780017-36780065)
chr1 (1-52)||(37413237-37413289)
chr1 (1-59)||(10039504-10039562)
chr1 (1-52)||(9110750-9110801)
[»] chr8 (1 HSPs)
chr8 (1-59)||(38188463-38188521)
[»] chr2 (4 HSPs)
chr2 (1-59)||(40956982-40957040)
chr2 (8-52)||(32473291-32473335)
chr2 (1-59)||(26153177-26153235)
chr2 (4-52)||(33124900-33124949)
[»] chr7 (1 HSPs)
chr7 (8-52)||(7990726-7990770)
[»] chr6 (1 HSPs)
chr6 (1-51)||(34122385-34122435)
[»] chr3 (3 HSPs)
chr3 (8-52)||(17526585-17526629)
chr3 (1-53)||(45517861-45517913)
chr3 (1-57)||(3447837-3447893)
[»] chr5 (1 HSPs)
chr5 (8-60)||(27642866-27642919)
[»] chr4 (2 HSPs)
chr4 (6-48)||(13719011-13719053)
chr4 (1-52)||(859309-859358)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 36779771 - 36779957
Alignment:
Q  1 tttagtcatatcattcaattattttttctttaattttgttcaattatgtgtgcgtctaagaccaaaaaagaatttatcatgcttcagttgaataacaaaa 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36779771 tttagtcatatcatttaattattttttctttaattttgttcaattatgtgtgcatctaagaccaaaaaagaatttatcatgcttcagttgaataacaaaa 36779870  T
Q  101 ccattatttatgcttgacttatagnnnnnnnnctttctt-agtaatgtttgccttatagttacttaggggattttgtgatatccaca 186  Q
    |||||||||||||||| ||||||          ||| || ||||||||||||||||||||||||||| |||||||||||||||||||    
T  36779871 ccattatttatgcttgccttataatttttttttttttttgagtaatgtttgccttatagttacttagcggattttgtgatatccaca 36779957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2223428 - 2223377
Alignment:
Q  1 tttagtcatatcattcaattattttttctttaattttgttcaattatgtgtg 52  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  2223428 tttagttatatcattcaattattttttctttaattttattcaattatgtgtg 2223377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 36780017 - 36780065
Alignment:
Q  187 tatatatgcaaatatgcacatgtaaattttgttgagaataatagcgtgt 235  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  36780017 tatatatgcaaatatacacatgtaaattttattgagaataatagcgtgt 36780065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37413289 - 37413237
Alignment:
Q  1 tttagtcatatcattcaattattttttctttaa-ttttgttcaattatgtgtg 52  Q
    ||||||||||| ||| ||||||||||||||||| |||||||||||||||||||    
T  37413289 tttagtcatattatttaattattttttctttaatttttgttcaattatgtgtg 37413237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10039562 - 10039504
Alignment:
Q  1 tttagtcatatcattcaattattttttctttaattttgttcaattatgtgtgcgtctaa 59  Q
    ||||| ||||| |||| |||||||||||| ||||||||||||||||| |||| ||||||    
T  10039562 tttagccatattattctattattttttctgtaattttgttcaattatttgtgtgtctaa 10039504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9110750 - 9110801
Alignment:
Q  1 tttagtcatatcattcaattattttttctttaattttgttcaattatgtgtg 52  Q
    |||| |||||| |||||||| |||||||| ||||||||||||||||| ||||    
T  9110750 tttaatcatattattcaattgttttttctataattttgttcaattatatgtg 9110801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38188521 - 38188463
Alignment:
Q  1 tttagtcatatcattcaattattttttctttaattttgttcaattatgtgtgcgtctaa 59  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||    
T  38188521 tttagtcatatcattcaattattttttcttcaattttgtttaattatgtgtgtgtctaa 38188463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 40956982 - 40957040
Alignment:
Q  1 tttagtcatatcattcaattattttttctttaattttgttcaattatgtgtgcgtctaa 59  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||    
T  40956982 tttagtcatatcattcaattatcttttctttaattttattcaattatgtgtgtgtctaa 40957040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 32473291 - 32473335
Alignment:
Q  8 atatcattcaattattttttctttaattttgttcaattatgtgtg 52  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  32473291 atatctttcaattattttttctttaattttgttcaattatgtgtg 32473335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 26153177 - 26153235
Alignment:
Q  1 tttagtcatatcattcaattattttttctttaattttgttcaattatgtgtgcgtctaa 59  Q
    ||||||||||| ||| ||||| ||||||||||||||| ||||| ||| |||| ||||||    
T  26153177 tttagtcatattatttaattactttttctttaattttattcaactatttgtgtgtctaa 26153235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 33124900 - 33124949
Alignment:
Q  4 agtcatatcattcaattatttttt-ctttaattttgttcaattatgtgtg 52  Q
    ||||||||||||| || ||||||| ||| |||||||||||||||||||||    
T  33124900 agtcatatcattctatcatttttttcttgaattttgttcaattatgtgtg 33124949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 7990770 - 7990726
Alignment:
Q  8 atatcattcaattattttttctttaattttgttcaattatgtgtg 52  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7990770 atatcattcaattattttttctttaattttgttcaattatgtgtg 7990726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34122385 - 34122435
Alignment:
Q  1 tttagtcatatcattcaattattttttctttaattttgttcaattatgtgt 51  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  34122385 tttactcatatcattcaattattttttctttaattttattcaattatgtgt 34122435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 17526585 - 17526629
Alignment:
Q  8 atatcattcaattattttttctttaattttgttcaattatgtgtg 52  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  17526585 atatcattcaattattttttctttaattttgttcaattatatgtg 17526629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 45517861 - 45517913
Alignment:
Q  1 tttagtcatatcattcaattattttttctttaattttgttcaattatgtgtgc 53  Q
    |||||| ||||  ||| ||||||||||||||||||||||||||||||||||||    
T  45517861 tttagttatatgcttcgattattttttctttaattttgttcaattatgtgtgc 45517913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3447893 - 3447837
Alignment:
Q  1 tttagtcatatcattcaattattttttctttaattttgttcaattatgtgtgcgtct 57  Q
    |||||| |||| ||||  ||||| ||||||||||||| |||||||||||||| ||||    
T  3447893 tttagttatattattcggttattctttctttaattttattcaattatgtgtgagtct 3447837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 27642866 - 27642919
Alignment:
Q  8 atatcattcaattattt-tttctttaattttgttcaattatgtgtgcgtctaag 60  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||    
T  27642866 atatcattcaattatttatttttttaattttgttcaattatgtgtgtgtctaag 27642919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 13719011 - 13719053
Alignment:
Q  6 tcatatcattcaattattttttctttaattttgttcaattatg 48  Q
    |||||||||| ||||||||||||||||||||| ||||||||||    
T  13719011 tcatatcatttaattattttttctttaattttattcaattatg 13719053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 859358 - 859309
Alignment:
Q  1 tttagtcatatcattcaattattttttctttaattttgttcaattatgtgtg 52  Q
    ||||||||||| |||||||||||||  |||||||||| ||||||||||||||    
T  859358 tttagtcatataattcaattatttt--ctttaattttattcaattatgtgtg 859309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University