View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10395_low_13 (Length: 239)
Name: NF10395_low_13
Description: NF10395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10395_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 52712709 - 52712932
Alignment:
| Q |
1 |
tgccaaagaatacaatatccatccaaacatactcggtactgggtaagtctcattttttgttctgttttcatttccatctctgttaaaagaaaatgcaaat |
100 |
Q |
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| T |
52712709 |
tgccaaagaatacaatatccatccaaacatactcggtactgggtaagtctcattttttgttctgttttcatttccatctctgttaaaagaaaatgcaaat |
52712808 |
T |
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| Q |
101 |
gattatgaaaacttatcgaaattctaaaagagaatttggtatttgtgctgcagggttatatttggaatgttgattgcattgccaataacagtactctact |
200 |
Q |
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| T |
52712809 |
gattatgaaaacttatcgaaattctaaaagagaatttggtatttgtgctgcagggttatatttggaatgttgattgcattgccaataacagtactccact |
52712908 |
T |
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| Q |
201 |
atgtaattcttgcattattgtaag |
224 |
Q |
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||||||||||||||||| |||||| |
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| T |
52712909 |
atgtaattcttgcattactgtaag |
52712932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 52718369 - 52718575
Alignment:
| Q |
1 |
tgccaaagaatacaatatccatccaaacatactcggtactgggtaagtctcattttttgttctgttttcatttccatctctgttaaaagaaaatgcaaat |
100 |
Q |
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|||||||||||||||| |||||||||| |||||| ||||||||| ||||||||||||| | | || | || | |||| |||||||||||| ||||| | |
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| T |
52718369 |
tgccaaagaatacaatctccatccaaatatactcagtactgggtgagtctcattttttttaattttattgttac-atctttgttaaaagaaattgcaagt |
52718467 |
T |
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| Q |
101 |
gattatgaaa----acttatcgaaattctaaaagagaatttggtatttgtgctgcagggttatatttggaatgttgattgcattgccaataacagtactc |
196 |
Q |
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||||| | | | |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
52718468 |
gattaagtatgtggatttattgaaatactaaaacagaatttggtatttgtgctgcagggttatatttggaatgttgattgcattgcccataacaatactc |
52718567 |
T |
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| Q |
197 |
tactatgt |
204 |
Q |
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|||||||| |
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| T |
52718568 |
tactatgt |
52718575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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