View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10395_low_14 (Length: 238)
Name: NF10395_low_14
Description: NF10395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10395_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13485776 - 13485553
Alignment:
| Q |
1 |
cctcttcactaggtgcagcatcacctttggtgaagtatttcacagtaagctttgcaatggatcctccatctggccctgcagacaatttagactcaaagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13485776 |
cctcttcactaggtgcagcatcacctttggtgaagtatttcacagtaagctttgcaatggatcctccatctggccctgcagacaatttagactcaaagga |
13485677 |
T |
|
| Q |
101 |
gatcttctccactgtgtctggaagtccaccaccaccaactatgctgtagttgtaagcaaagttaacatcatctactaagtccactttgtgcaaatcatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13485676 |
gatcttctccactgtgtctggaagtccaccaccaccaactatgctgtagttgtaagcaaagttaacatcatctactaagtccactttgtgcaaatcatac |
13485577 |
T |
|
| Q |
201 |
tttgtttcaccacctgctcataat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
13485576 |
tttgtttcaccacctgctcataat |
13485553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13492215 - 13491992
Alignment:
| Q |
1 |
cctcttcactaggtgcagcatcacctttggtgaagtatttcacagtaagctttgcaatggatcctccatctggccctgcagacaatttagactcaaagga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13492215 |
cctcttcactaggtgcagcatcacctttggtgaagtatttcacagtaagctttgcaatggatcctccatctggccctgcagacaatttagactcaaagga |
13492116 |
T |
|
| Q |
101 |
gatcttctccactgtgtctggaagtccaccaccaccaactatgctgtagttgtaagcaaagttaacatcatctactaagtccactttgtgcaaatcatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13492115 |
gatcttctccactgtgtctggaagtccaccaccaccaactatgctgtagttgtaagcaaagttaacatcatctactaagtccactttgtgcaaatcatac |
13492016 |
T |
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| Q |
201 |
tttgtttcaccacctgctcataat |
224 |
Q |
| |
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||||||||||||||||| |||||| |
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| T |
13492015 |
tttgtttcaccacctgcgcataat |
13491992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 13509537 - 13509321
Alignment:
| Q |
1 |
cctcttcactaggtgcagcatcacctttggtgaagtatttcacagtaagctttgcaatggatcctccatctggccctgcagacaatttagactcaaagga |
100 |
Q |
| |
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|||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| |||||||| ||||||| |||||| || |
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| T |
13509537 |
cctcttcacttggtgcaacatcacctttggtgaagtatttcacactaagctttgcaatggttcctccatttggtcctgcagataatttagcctcaaatga |
13509438 |
T |
|
| Q |
101 |
gatcttctccactgtgtctggaagtccaccaccaccaactatgctgtagttgtaagcaaagttaacatcatctactaagtccactttgtgcaaatcatac |
200 |
Q |
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|||||||| | |||||||||||| ||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13509437 |
aatcttctctattgtgtctggaagcccaaaaccaccaactatgctgtagtggtaagccaagttaacatcatctactaagtccactttgtgcaacacatac |
13509338 |
T |
|
| Q |
201 |
tttgtttcaccacctgc |
217 |
Q |
| |
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|||||||||||| |||| |
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| T |
13509337 |
tttgtttcaccatctgc |
13509321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 13515295 - 13515106
Alignment:
| Q |
1 |
cctcttcactaggtgcagcatcacctttggtgaagtatttcacagtaagctttgcaatggatcctccatctggccctgcagacaatttagactcaaagga |
100 |
Q |
| |
|
|||||||||| || | | |||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| |||||| || |
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| T |
13515295 |
cctcttcacttggagtaacatctccttttgtgaagtatttcacattaagctttgcaatggatcctccatttggacctgcagacaatttagcctcaaatga |
13515196 |
T |
|
| Q |
101 |
gatcttctccactgtgtctggaagtccaccaccaccaactatgctgtagttgtaagcaaagttaacatcatctactaagtccactttgtg |
190 |
Q |
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|||||||| | |||||||||||| ||| |||| ||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||| |
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| T |
13515195 |
aatcttctctattgtgtctggaaggccaacacctccaacaatgctgtagttgtaagccaagttagcatcatctactaactccactttgtg |
13515106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 13501492 - 13501276
Alignment:
| Q |
1 |
cctcttcactaggtgcagcatcacctttggtgaagtatttcacagtaagctttgcaatggatcctccatctggccctgcagacaatttagactcaaagga |
100 |
Q |
| |
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|||||||||| || | | |||| ||||| || |||||||||||| |||| ||||||||||||||||||| ||| |||||||||| ||||| ||||| || |
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| T |
13501492 |
cctcttcacttggagtaacatctccttttgtaaagtatttcacactaagttttgcaatggatcctccatttggacctgcagacagtttagcttcaaatga |
13501393 |
T |
|
| Q |
101 |
gatcttctccactgtgtctggaagtccaccaccaccaactatgctgtagttgtaagcaaagttaacatcatctactaagtccactttgtgcaaatcatac |
200 |
Q |
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|||||||| |||||||||||||| | | |||| ||||| ||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||| |
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| T |
13501392 |
aatcttctctactgtgtctggaagactatcacctccaacaatgctgtagttgtaagcccagttagcatcatctactaactccactttgtgtaaatcatac |
13501293 |
T |
|
| Q |
201 |
tttgtttcaccacctgc |
217 |
Q |
| |
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|| ||||||||| |||| |
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| T |
13501292 |
ttggtttcaccatctgc |
13501276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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